Scaffold Ga0272425_1000135

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000135
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 148744
• Total Scaffold Genes: 165
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (15.15%)
• Novel Protein Genes: 25
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (8.00%)
• Associated Families: 19

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F010214	Metagenome	306	Y
F019260	Metagenome	230	Y
F021026	Metagenome	220	Y
F036035	Metagenome	170	Y
F041516	Metagenome	159	Y
F051591	Metagenome	143	Y
F055318	Metagenome	138	Y
F057010	Metagenome	136	N
F057012	Metagenome	136	Y
F058565	Metagenome	134	Y
F065269	Metagenome	127	Y
F086375	Metagenome	110	Y
F086376	Metagenome	110	Y
F089603	Metagenome	108	Y
F094622	Metagenome	105	Y
F100079	Metagenome	102	Y
F102180	Metagenome	101	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000135100	F019260	N/A	MIQELKSISRINIKSEKYLNSELYIEEQKNNLNQFIFELISKLKLNVNCYSTLESRLLYEYSRLLKNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMRNCIFIKYLFNFQQHINAIEYDVVTXKFNLKNKLFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLLKSKAVIHSIFVISTVFAYLVKYATSSTGLKATISSSRNFMNLSIINMKKRDLLILKKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLQVISLFVFAIFIDNFAFDTSLVLKKV
Ga0272425_100013511	F104134	N/A	MSLLLSLQSDMIRFLXSVDMSVIFCKICSINFFCIFFISFLFIILIMTSHFLQSDDRSLLSCCFFIAISSLVTFAHDVIFVERRMLFCVCNCLLSSXTDVFSFYTFFVMNAFXFMXCFSSELSQRRXISFNAISFHEXSLLFSFSNVDIFISRSIMLATFSSLLYNTDSXFL
Ga0272425_1000135118	F055318	N/A	MLRDNEALCVDCMQSFRDHTDFDNFNVHATKSNLHADEKVK
Ga0272425_1000135119	F089603	N/A	MYINALQIQKKIAKIKIETEITVIFTHELIRYSKVTRVSDKIITIKAKLQAISDAIAICSEKALKNSEI
Ga0272425_1000135120	F036035	N/A	MKDDAMXRKHHELEKASRNHEHDNSDHLNDTLDKHTESISDCDIIKELNERKRK
Ga0272425_1000135122	F102180	N/A	MNXELNKRLKRSTLVITHHDELKELVARVKHLADVATVNQECHEKIYKVYNDNQTSLKTVKAIISTKDQTCLQQVQIAHESIQS
Ga0272425_1000135127	F041516	N/A	MIQKAIHIHEAYNLSFRNHEIIHEKENLSDIEKALHMLKESILVKDFNLHHFT
Ga0272425_1000135136	F051591	N/A	MLDVIALYLVYQSSHVISLRIVTTDLNLLSCTSRKDKTDSDLIRNAVLLXNKVVLCAIFEHKRVXFRFLHQYAVFCAVLTLIDDLFFSCEFALXFDNQITVXLDDSFFCVNELSFRLRFWSAXARKISLFNFXLATQSSVKLLSRMRACFDRMIVLYNLLIDLIYHMLR
Ga0272425_1000135145	F065269	N/A	MTRSSESTSIARYDLRNAKRESLLSQNQTASEEEGMNASSDTEEENMNALFFNHEMIKISINTELNA
Ga0272425_1000135151	F089603	AGG	MINTHYKELERIIKKTKNIVMYTDASQIRKKIAEVKTEIETTVIFTHKLVRCSKATSISDKIIIMKAKLQAISDAIAMCSEKALKNSEI
Ga0272425_1000135155	F057010	N/A	MTMKALKKRCEELKARLQAKEIISSSSIYSERSRFQKILDSSLFTDEKNSIXKNXYEKVQNKLEINVDLFSSEXVKLSYVHFRLFNDAAEITQSKRERDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNKINFXLRFAXVTQLIQLSTLKEIRFYLIQLNNDQRAIQEIKNREAMIKAXTTKQIIYAEELVKAIRRIIEMKMTDQSKSRDAVSTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDEFDYSSNFNSESDSKN
Ga0272425_100013528	F036035	N/A	MKDDAMQREHYELEKASRNYKCDNSNYLNDTLNKHTESILNCDIIKELNERERK
Ga0272425_100013534	F094622	N/A	MFALKQKVYLNDSNSRNNVTAIAMRMNXELDKRLRRSTLVITHHDELKELVTKTKHLADVATANQECHEKIYKVYNDSQTSLKTVKAMISTKNQTRLQXVQTAHESI
Ga0272425_100013535	F036035	N/A	MKDDATXREHHELEKASRNQKHDNSNHSNDTFNKHTELISDCDVIKESDERERK
Ga0272425_100013547	F010214	N/A	MRVSVLFNYDASSLLCSSLTIFYTTMSRFDLQFKDERRFLCIHDARDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVTLFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXSMKENAFXSFSXALDFPRE
Ga0272425_100013552	F057012	N/A	MLXNDLSAXDHCKFEKXSVFIKVVTESNILIFCFISMFDDSFNFKLFIIDVILNILEKIFRFLILINIKVTDITFINEFLMSELCEHFDIQSISLLKLKLIXLYDEILNXKLITYTLYTSVMIQKHKNEMMSLLITHLDQHKIIIENLXLKRNQILINFANNQLIFLLNIKISKSVILKASNQSTFHRSESSEICKMKRKNLKSIITLMIILKRSTNSKSVNXFIESALIQKQST
Ga0272425_100013553	F100079	N/A	MFRHRHFICKXYADEKTSLKKEKHKRVSKEXLNYIVXLKV
Ga0272425_100013561	F058565	N/A	MNCSNADSETITSDVDSLQENRDARSKCLCNDEENVANIIDLLIKISTLEKEKSKDHSXKEIALKLI
Ga0272425_100013566	F010214	GAG	MKVSVLFDYDASSLLCSSLMIFYTTMFRFDSXFKDERRFLCTCDAHDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXKDKVXLYXVTLFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXSMKENAFXSFSXALDFSRE
Ga0272425_100013571	F021026	N/A	MQQHHLLLHQLTYSCRLQEFDDQVTLIDDITHVIEITMILDEHIEKLFFYVTKLSQYLIIMSLSXLCHHVIDVNFEHNILILSFFFCLNHCYQFFIKIYDFNQQEENFSLEVNKVAFLQSRFQFAXKKQFSFQFTHKK
Ga0272425_100013574	F008735	N/A	VSLLIYDESXLDINDLDSMKEVMIVVHVHALYQTLLSCIQSIFVLLILRYVKKLLESKSNEDSNRICREVNDEKRLIVQDLCNDLNYHCKKLRIQFYINXRTENDEREXDDDIMLSNLILKLLHCMKNLNXIFDYTLSELFNNMLIIN
Ga0272425_100013579	F102180	N/A	LTLIIIHHDELKELVARVKHLANVATVNQECHEKIYKVYNDNQTSLKTVKVMISTKNQTCLQQVQITHESIQS
Ga0272425_100013584	F036035	N/A	MKDDAIXRKHHELEKVSRNHEHNDNDHLNDIFNKHTELISDCDIIKKSNERKRK
Ga0272425_100013588	F086375	N/A	MFTLFVNSKFITSXNHDENXFNEIKEYYKRQNNNCVVIFKXLYKLRQFNVXKEVNEINKAVMKDNVRHQVKQERKNKKIHDNAFQ
Ga0272425_100013592	F086376	N/A	MTRSSESVSIARYNLXNVRRESLLSQNXTALEEEDTNASSNTEEKNMNALLFNHEMIKISINTELNAXISAHEADDIVVFIKYICQQHDIEIEIHNDMIQMLEDVNEINITLKITQTRLQKENRNKNVIIHHLEAALSRQSTLISEGRFSKLIKLFDSSLFKDSAQNVDN