Scaffold Ga0272425_1000128

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000128
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 151095
• Total Scaffold Genes: 162
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (23.46%)
• Novel Protein Genes: 18
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Associated Families: 18

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F008735	Metagenome	328	Y
F010214	Metagenome	306	Y
F028978	Metagenome	189	Y
F032883	Metagenome	178	Y
F033266	Metagenome	177	Y
F036994	Metagenome	168	Y
F038009	Metagenome	166	Y
F055318	Metagenome	138	Y
F059497	Metagenome	133	Y
F061401	Metagenome	131	Y
F074202	Metagenome	119	Y
F074203	Metagenome	119	Y
F086375	Metagenome	110	Y
F089602	Metagenome	108	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000128120	F074202	N/A	MCVYEXSLFTCXKEIYMYVEKCLRLFYHXLRSQSLFLTKLLEKCVSNFMKTVDCKINCKMNCKTIYVNFLLMSSCLLCSNNAFNLALLLNDDFFLKLVISKLRLRVETELDFKEEVILRCSFFTAKDDDLDFSFNLETATNFIKFLXFTIFHNDXSSFFNLFLSVKYDVTRSKXADAENRAFESEVVVDLAVLNNVNNVSSSKFENLDCEDVMKRLILIESSFFSSDTVN
Ga0272425_1000128126	F038009	N/A	MIKALNFQLNYVKLYKRSIELICLKNNKSSKEKRISTLDFXXVFFLNDLKNTIKSFLFQMRDKIERSLFLVNELSISXLLMSERRIILLFVSKXETELLFASELRTELLLVSELKTELLLSSEXKIKLLLASKLNAELLLVSNL
Ga0272425_1000128130	F001951	N/A	MMKLKFIDSSRNKRERDEDTVKTTVTKVMIFELKELLVNAETFLTLMNKTMMKTK
Ga0272425_1000128131	F089602	N/A	MKDEXSSFIEILSEENDNLSEIIDIVLQIVNQXKIFHQRMFFLLIEEIVVVNKAIHALLQSFTKI
Ga0272425_1000128132	F008735	N/A	MREITIIIHVHALYQTLLSCIQLIFVSFIFRYVKKLLEFKSDENSDRVCKEMNNERRLIIQDLCNNLSYYYKKLRIQLYINXRTENDEXEQSDNIMLSNLILKLLHYMKDLNXIFNHTLSELFDSTLIIDQEIVKXLHLNERIIKRDFNVXKCCRKCRSFVMSKTELNYKYY
Ga0272425_1000128140	F074203	N/A	MSSHSSTEERSEEFRNRFFQISDADSLKSRTKSSSAASFIHEDDESFAETIILFVFYEIXKTRSLVLDEETNQLYKLNKQQEDEIKELKTKLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXENXYGKIQNKLEINVDLFSNERVKLSYIHSRLFDDTAEITQARCEHDYVNLYRIVDDLLKELAQLFDDSNKKVNFHKEYYNLIQEFKKFSEFYTQFQRLSFYLDYHKK
Ga0272425_1000128141	F061401	N/A	LNNDQQVIQEIKNKIKRVNDLSKTIFHKATIVTQSVNHLKSDQLKSRDAILTNVKEADILVESCFIYHKSGHSSKECLDQSTRINAVNNEYDCFDFDLNFDSKN
Ga0272425_1000128147	F002432	N/A	MKFSNNSNIFLITSMIFFYFNKEFHSXMSFDSNMMNYETTHERLEARKADDIVIXMKELLNFNRQQLKKTKLIIEVQINKHKRNVTYEVDDXVXLSFRNVKTMRLCKDLKDKQLNLYQITVKVSVFYHLCLSVSMKHLHSMFSSKLLQLYSEDFLSEQHSELLKLITIKDDEH
Ga0272425_1000128155	F028978	N/A	MKIADLEEKKNDESIYQLILEANRINKNCILLHEVVLKDEAQYEDTKLRDCRVQNKILYRDDLL
Ga0272425_1000128160	F033266	N/A	MLSRSLTEERFEEFRNRFSQTSDADSLKPRTKSSSAASFIHEDDESFAETVIPLVFYEIXKTRSLVFDEETDQLYKLDKQQEDEIKELKTRL
Ga0272425_1000128161	F004755	GAG	LSYIHSRLFNDAAEITQARRERDCVNLYKIIDDLLKELAQLFNDSNKKVNFRRKYYNLIQEFKKFSKFYTQFQHLSFYLDYYKKQLIADLKDKIHLHLRFIXVDQLVQSDSLKEIRFYLIHLNNDQRVIREIKNKIKRINDLSKTIFHRATVVTQSVDHLKSDQLKSRSAILTNIKEADILVESCFICHKSDHSFKECFDQPTRINAVNNEYDRFDFNLNFDSKN
Ga0272425_100012837	F096307	N/A	MLYIVVTQVNASLKEDVLKHKKDVDLKDVCNTKKCVCHKNLLITRNTKKCVCLKDNRSXLENAKEEKRCXVIFESNLSQI
Ga0272425_100012838	F032883	N/A	MQNDXVKXLFMMKFSENFNIFSIISMTSFYFNKNFHLRMSFNSDTTDYKTIRERLEAEKANDIII
Ga0272425_100012852	F059497	GAG	MFIEDIDRKIVYNTQCKLEIINIFSVNEMTQNLEDIKVKLSLKHQNFLDVFDXVQADRLLFHHSYDHKIELTSDVTSSHCQAY
Ga0272425_100012859	F086375	N/A	MFILFVYSKFIASXNCDKNXFDEIKKHYKRQNNDHVIIFKXLHKLRQFNVXQEVNEINKAVMKDNVKDEIEQKXKNKDIHDNTSQ
Ga0272425_100012865	F010214	N/A	MXCLSKLLMKVFMLFDYDTSSLLCFSLMIFYTMMSRFDSXFKDERRFLCTHDAHDCNVRKAVFFYSMIVIHXAEKYVMKERCTXXENKVXLYXVILFFSXFDLCHVDVEXIVSINVQSQSFNVXLXSMKENVFXLFSXALNFPRE
Ga0272425_100012871	F036994	N/A	MKSVIEADSLVDLLIEEIDYRLVIEADSLVACEREVDQFTDR
Ga0272425_100012876	F055318	GAG	LNDIETLRDDEALCVDRVQSFRDRADFDNLNVHATSNLHADEKVK