Scaffold Ga0272425_1000119

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000119
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 156921
• Total Scaffold Genes: 182
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (41.21%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F006206	Metagenome	378	Y
F013598	Metagenome	269	Y
F018839	Metagenome	232	Y
F025887	Metagenome	199	Y
F036036	Metagenome	170	Y
F044226	Metagenome	154	Y
F048019	Metagenome	148	Y
F061401	Metagenome	131	Y
F061402	Metagenome	131	Y
F065269	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100011910	F061402	N/A	MIEFINNNAILSLIEQSMFFLNKSFHSHMSFDSNSIKYEITRAKIEAGKAENIFKHMK
Ga0272425_100011915	F025887	N/A	MSDDSFDFKSFTVDIILSSLEKIFRSFALINTEVIDMTFIDESLMSKLCECFDIQSISLSKSKSN
Ga0272425_100011918	F048019	N/A	VNEHAFELFFAQAFAKALQDESTVYALVMINIIEELIIEHQVKAMNNVMSCITNALETQTLLIELKEYKDVFLTESVNKLLLHEDHDYAIEITAKSSYKSLYNLLNTELATLRQYLDDVLAKE
Ga0272425_100011924	F044226	N/A	MMKFSDNFNIFSIISMISFYFNKDFHSRMSFDSDTIDYKITRERLKARKADDIVI
Ga0272425_100011928	F006206	GAG	LCKLDEILSEENYFEKLFLIDVFLNSQNRSFSLCSLIDSDSVAHMLIHANLVNRVCKKLEIQSISLTKEKLIRDYDEKIFKKIITHKILLNFIIESHKKLTVSMLIADIDHHEIILSKL
Ga0272425_100011929	F061401	N/A	LNNDQRVIQEIKNKVNLIKCIDDLSKIIFHKVVVTQSVNHSKSDHLKSCDAILTSVKEADVLVETCFICHKLDHSFKECSDQPTKINAVNNEYDCFKFDFDSNFDSKN
Ga0272425_100011942	F013598	N/A	MNFIINLSDSYDYNAILTIICRLSKERHYISCIIDDENITVEKTAEMLLQ
Ga0272425_100011945	F065269	N/A	MSIAHYDFQNVRRESLLSQNRTASEEEDTNASSDTEEKNMNMLFFNHEMIKISISTELNA
Ga0272425_100011948	F025887	N/A	MSDNSFDFKSFTIDVILSSLEKIFRFFALIDTEVTDMTFINESLMSELCERFDIQSISLSKSKLI
Ga0272425_100011953	F061402	N/A	MIEFVDNNAISLSIEQSMFFLNKNFHSHMSFDLNLIKYEITQAEIEADKAENIFKHMK
Ga0272425_100011955	F013598	N/A	MNFITNLFDSSEYNAILMIICRLSKKRHYISCITDDEDITVEKTAEMLI
Ga0272425_100011959	F018839	N/A	MMIVKVVTFNHLTSDLYAAVSIIAMFIKLKDEAKLTELNDFMILLNEDDFSLSQVMTEEINLFSI
Ga0272425_100011961	F001253	N/A	VTFIKDVMKDVLISSTMSSSDDLFASKSLTIKCVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDYLQIESLSFIKLKSIRKFNDYYAKKLITHAIYSNLTVQDHMKRFVFMLITRL
Ga0272425_10001199	F036036	N/A	MLVSLIHHLLSCFDQSFASEDQCLIHVIEYIFDSSNLQTFANAFILDDVRVEAHMRMKVVVHEEESQENN