Scaffold Ga0272425_1000104

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000104
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160940
• Total Scaffold Genes: 169
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (20.12%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F011463	Metagenome	290	Y
F021216	Metagenome	219	Y
F036035	Metagenome	170	Y
F038008	Metagenome	166	Y
F051591	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000104104	F010214	GAG	MKVSVLFDYDASSLLCSSLTIFYTTMFRFDLQFKDERRFLYIRDAHDCNVRRAVFSYSMIVIHXAEKYVMKERRTRXEDRVXLYXVILFFSXFDLCHVDVEXIVSINMQSQSFDVXLXSMKENAFXSFSXALDFPCE
Ga0272425_100010411	F036035	N/A	MKDDAMQREHHELEKASRNHERDDSNHSNDILNKHTESISDCNIIKESDEREKE
Ga0272425_1000104115	F051591	N/A	MLDAIALYLMYRSSRVISLRIVTTDLNLLPCASRKGKTDSNLIRNVVLLXNNVVFYEIFKRKRVXFRFLHQYAVFCAVLKSIDDLFFSCEFALRFINQITVXIDDSFFCVDELSFRRRFWPAXAQKISIFDFXLATQSSVKLLSRIRACFDHIIVLYNLSIDLIYHMLQ
Ga0272425_1000104119	F051591	N/A	MLDAIALYLMYQSNHVISLKIVTTDLDLLSYASRKGKTDSDLIRNTVLLXNNVVLYAIFEHKRVXFXFLHQYAVFCAVLKSINDFFFSCEFALXFINQITVXIDDSFFCVDELSFRRRFXPAXAXKFSIFDFXLATQSFVKLLSRMRACFDHIIVLYNLLINLIYHMLX
Ga0272425_1000104131	F036035	N/A	MKDRTKDDAMXKEHHELKKAFRNHEHDNNNHSNDTFDKHTKSISDCNVIEELNERERK
Ga0272425_1000104133	F051591	N/A	MLDTIALYLMYRSSCIISLRIITTDLDLLSCASRKCKTNSDLIRNAVLLXNNVVFCAIFKHKRVXFRFLHQYAVFCAVLKSIDDLFFSCEFTFQFINQITVXIDDSFFCVDELSFRRXFXSAXAQKISIFDFXLAMQSSVKLLSXIRTCFDHMIVLYNLLINLIYHMLX
Ga0272425_1000104159	F021216	N/A	MKSRIKSNAMRKEHHELEKALKNHERSDNDHLNNIFNKHTESISSCDVIEESNERKKK
Ga0272425_1000104162	F038008	GAG	MNQSHFYTMIFXSKSLKIVIVANKKMSIKQHNLDTFTLKQRVYSNDNDSKDNVTAIAMRMNXKLDKRLKRLTLIITYHDELKELVARMKHLADVVTVNQECHKKIYKVYSDSQTFLKTVKAMISTKD
Ga0272425_10001043	F051591	N/A	VKIDHKTDSTSRKDKTDSDLIRNAVLLXNNVVLCAIFKHKRVXFQFLCQYAVFCAVLNLIDDLFFSCEFALQFINQITVXIDDSFFCVDKLSFRCRFXSAXAXKFSIFDFXLAMQSSVKLLSQMRACFDCTIVLYNLSINLIYHIRFVCDMHVYHEXX
Ga0272425_100010431	F036035	N/A	MKDRTKDDATXREYHRFEKASRNHERDDSNHLNDTLNKHTESISNCDVIKKSDKRERK
Ga0272425_10001049	F038008	N/A	MNXNHLYIMILXSKSLKIIIVANKKMSIKQHNLDTIALKQRVYLNDNNSRNDVTAITMKMNXKLNKRLKKLTLIITYYDELKELVMKMKHLADVVTVNQECHERIYKVYNDNQTSLKTVKVMISTKEQTRL
Ga0272425_100010490	F038008	N/A	MKMNXSYFYTAILXSESLKIIIVANKKMSIKQHNLNMFTLKQRVYSNDSDSRNDVTAIMMRMNXELNKRLRRSTLVITYHDELKELVAKMKHLANVATVNQECHEKIYKVYSDSQTSLKTVKVMTSTKDQTRL
Ga0272425_100010498	F010214	GAG	VSVLFVYDASSLLCSSLTIFYTTMSRFDSRFEDERCFLCTRDARDCNVRRAAFSCSMIVIHCAEKYVMKERCTRXEGRVXLYXVTLFFSXFDLCHVDVEXIVSIDVQLQSFDVXLXSMKENAFXSFSXTLDFSRRQIYDLMSSKEDEFKSSQYISVIDESLLLRAL
Ga0272425_100010499	F011463	N/A	LKKTKQIIKDQINKHKXDVIYKINDXVXLSFRNVKTMRSCKDLKDKQLEFYQIMIKVEIFYHLHLSVSMKQLHSMFSSKLLHSYFNDLLSEQHSESFRLLTIKNDEHXKINDILNFRCYQDXIQYKVKXTELNXNDEXYYADKEKFEDFEEILIKFHKLYSNKSR