Scaffold Ga0272425_1000061

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000061
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 189987
• Total Scaffold Genes: 190
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (31.58%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F007840	Metagenome	343	Y
F009377	Metagenome	318	Y
F010214	Metagenome	306	Y
F011463	Metagenome	290	Y
F026450	Metagenome	197	Y
F028368	Metagenome	191	Y
F037509	Metagenome	167	Y
F044226	Metagenome	154	Y
F050043	Metagenome	145	Y
F061402	Metagenome	131	Y
F075494	Metagenome	118	Y
F091080	Metagenome	107	Y
F104135	Metagenome	100	Y
F104136	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100006112	F091080	N/A	MIILCXSRXVINKDIISFLYSCIMINVYRACVINFQSKILSYDXINFDFDSDINXISKRSHSFDIKDSSMKVMSVTSIFIKERNLNIFSRLFKMMLTVNDLKSNESSDMLMKQNMSISLSVTTLMKVSHFSNSLQFHASELIQDSHMLYVLTFCIXSKVLF
Ga0272425_1000061188	F007840	N/A	MINAIERQNNTRESIESTARLVELLDDLQLIKYASFTSINRISDKESSLIARESNRSRESINSQIKQQKRLHLLLSSIALRSISFF
Ga0272425_1000061189	F026450	N/A	MSRFFKERFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREVTSSSSTYSERSRSQKILDSSLFTDEKNSIXENXYEKVQNKLEINVDLFSSERVKLSYVHFRLFNDAAEITQSKHERDCFNSYKIVDELLKELAQLFDDSDKEVNFRRNYYNLVQEQKKFNEFYTQFQRLFFYLDYQEKQLIVNLKNKINLRLQFAXVTQLIQLSTLKEIHFYLIXLNNDQRAIQEIKNREAMIKA
Ga0272425_100006122	F009377	N/A	MTKSTELESESVSTTHYELQNAERELLLSQNXTASEEEDTNALLNIKEKNMNALFFNHEMIKISISTELNAXISAYEADNLVAFIKYICQQYDIEIKTYNDMIQMLNDINKINIKLKAINIKLKATQIMLNAVQTRLQKEMKKKNMIIRHLEATLSRLSTLILKDRFLKLIKLSDLSLFEDSRQNVNNXLSXMRNKLKMNKNHFSIEEMKIAYVKSRVSETTVKHIALRMRNTIMNLFLEAEEILSIINKMYDNLNQRHITQXQFLKLY
Ga0272425_100006123	F104136	N/A	MIFSIRLAQIFSESXSINKLXIXMNSSTFACKSTFDXQNXMLNQFSRHQXFKSLALLLASXXXSLLRSQLQSLHERNSEYXTLILLERSCLKKNSASNARSQNIKHTTVLSQLRCMKSQRIXKTTCSHQSSDXEQYTYILFHQHVXXFI
Ga0272425_100006128	F061402	N/A	MQDDXFVXLFMIEFVNNNAISSSIEQSTFFLNKNFHSYMSFDSNSIKYEITRARIEAGKAENIFKHMK
Ga0272425_100006138	F010214	N/A	MXCLSKLLIKVFVLFDYDTSSLLCSSLMIFYTIMSXFDSXFKDERRFLCIHDACDCNIHKAVFSYSMIVIHXAEKYVMKERCTXXEDRVXLYXVTLFFSXFDLYHVDVEXIVSINVRSQSFDVXFXSMKENAFXLFFXALNFSCE
Ga0272425_100006141	F104135	N/A	MNQDINVTQQYINALQHSNQMIXMFAVYLSTLKHQLSLYNDEHKXVHLFIKLRSELHMIITNVQLIFIIXNAFINLVAXLKINLRKKHVLSSKXFQDEDSYDXDKINKKTYSKXKKSHXSTKLDFSLKTSLHISSSYSKNLFNITCYMCNXKNHYFIDCRDEKIKNRSKESDVNRVFIDLMSYMSCFKILKKGKLSMNASNHREKNKKFSS
Ga0272425_100006147	F037509	N/A	MILISILIQIHSTDNEMSIKKFVYLMINNIKRQNNIKKSIESTRIYNHXIARESIAQSVASVQIN
Ga0272425_100006152	F044226	N/A	MQNDXAKXLSMVKFSENFNIFSIISMTSFYFNKEFHSXMSFDSDTTDYETTCERLEARKADDIII
Ga0272425_100006153	F011463	N/A	MKELLIFNHQQLKKTKQIIKAQVNKHKRDIIYEVDDXVXLFFRNIKITRSCKDLKDKQLELYQIIVKVEIFYHLHLLISMKQLHSMFSLKLLHSYSQDSLSEQHLKSSRLLTIENDDHXEIDDILNSKHYRDXIQYKVKXTELDQDDEXYYVDKEEFESSKEVLVEFHKLYSDKSH
Ga0272425_100006154	F000597	N/A	MKDVLISLITSMLNDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKFLTLTKTKLIQEFDDHYAKKLITHVIYSNLTI
Ga0272425_100006159	F028368	AGG	MLESIYQSQCSXRELRSFXTQYXIRVQVKKLVISSTVTEVKIISLCNLDEILSKENYFDKSFLVDALLISQNESFSLRSLIDSDSAVYTIIHINLVNRVCKELKIQPISLTKEKLIKEYDEKISKKTITHKILSNLIIESHKKLTVSMLIADINYHEVILGKSXMNKNEILLNMRIDVIVFPNQLNTFISIFSISLNSKHSSXLRSTSFTSISQSKVSRMLKRSVSTTIQKEFFSIXSINVALFKTLLNYSKKNQTEVFALFMKNIDRKIAYNTQCNLNALNVSLINETTQNLKDIKAKLSSKYHEFLDVFDRAQSNKLLSHRFYNHKIELISDSTSSRCRIYRMFSVKLLKVVRNQHRVSHMNVI
Ga0272425_100006170	F075494	N/A	MFIHNVNERRYSVDYVKSMLSNEIYCTXVINKVKKMFVHNVSKNTSICSAMHVRSMLLKVMTLAMQKTHLDEVHFLRDRISRSEFENLRKHDDETLTYKDCNVVEKQLNSVAETVDCKQLISCAIVRVLIIHEMIYNFSSKFIVELIKILQ
Ga0272425_100006174	F050043	N/A	MIKIXLKLKKDEVKENEKLRETEKTINKTTIVIHFCLCFIISITSFTQNVNNVYMLFTHHHCCHLHQLYITYTIYTVIYTHYNXRXIIIXLKISFFLVFLQRFEDFYREFLKRINECTSSFIKVNKDINYXDREXTHLKKKTIVMMNXHIKIRSETKVKDXIKDQIXVNFETLXLCQDII