Scaffold Ga0272425_1000059

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000059
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 193122
• Total Scaffold Genes: 181
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (19.89%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F002432	Metagenome	559	Y
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F008169	Metagenome	337	Y
F033266	Metagenome	177	Y
F036035	Metagenome	170	Y
F036994	Metagenome	168	Y
F041516	Metagenome	159	Y
F042102	Metagenome	158	Y
F048685	Metagenome	147	Y
F055318	Metagenome	138	Y
F087978	Metagenome	109	Y
F091080	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100005915	F000597	N/A	MKEMLISLMMSMSDDSFASESLTIECVLSSNEISYSLKSLINIKAADYSFINEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTV
Ga0272425_1000059156	F041516	N/A	MIQRVIHIHEAYNSSLRDHEIIHEKENLSNIEKTLHMLKESILVEDFNLHHFVTSVSRLNRIF
Ga0272425_1000059158	F036994	N/A	MKNVIEADSLVDLLIKEINYRLVIEADSLVACEREIDXFTDR
Ga0272425_100005916	F003820	N/A	MKLFSYLDYNNCILMNDLQNKINNRLQNALSVCLEDFASLHCLKIFLQDVNNKQRVNYQLRSQLCTVTVKVIVVSDKCIATSLSVMTSIINYVKSTFSFISELARLSIICYTCKILNHLFKNCSQNKINTSASYAFISHLHEIVISKNKKNEKMSSFEDSEAKN
Ga0272425_1000059160	F036035	N/A	MKDKMKDDVMXKEHHELEKASRNQEHDDSNHLNDTFDKHTELISDCDIIEELNEREKE
Ga0272425_1000059161	F036994	AGCAG	MXDRMIIEADSLVDLLIKEIDYRLVIEADSLVACEREIDXFIDR
Ga0272425_1000059162	F036994	N/A	MKSVIEADSLVDLLIEEINYRLVIEADSLVARERKVDRFTDR
Ga0272425_1000059163	F055318	N/A	MLRDDEALCVDRVQSFRDHTDFDNLNVHATSNLYADEKVK
Ga0272425_1000059169	F008169	N/A	MILDRETDXLNELSKQRDDEIKELKTKLQTKEITSSDFIYSERSKSQKISDSFXFTDEKNSTWENXYDKIQNKLEINVDLFSNKXVKLSYVHFRLFNDAADVAQSRRERDCVNFYKIIDDLLKELTELFNDSDKKVNFRKEYYNLIQESKKFSEFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLRFVXIDQLVQSDSLKEIHFYLIYLNNDQRVIREIKNKVNLIKHVNDLSKIIFHKAVVTQSVDHSKSDHLKSCDAILTNVKEADVLVETCFICHKSDHNSKECSDQPIRINAVNNEYNHFEFDFDSNFDSKN
Ga0272425_1000059172	F002432	N/A	MXKSLCKRLRITASLFTVYHSKIDDQTKXVNQDVEHRLRIYCNYMQNDXVKXISMMKFSDNFNIFLIISMISFYFNKDFYLRMSFDSDTTDYEIIRERLKARKADDIVIXMKELLSFDCQQLKKTKLIIEAQINKHRRDVIYEINDXVXLFFRNVKIMRPCKDLKDKQLESYQITVKAKIFYHLHLSVSMKHLHLMFSSKLLRLYSEDSLSEQHAEFLRLIIIDDDDDKHXKINDILNFRRYRGRLQYKVKXKDLDRNDEXYYVDKDKFNDFEKVLNEFHTLYSRKSR
Ga0272425_100005953	F048685	GAG	MRXVQKLVDFNFKIMYXFDKQNIKINALTCXADFVPRDLNDERVXYQRTTILTLNQMKIADLKKNNDQSIYKQVLDVNEIDENCTLLREAIARDEA
Ga0272425_100005986	F087978	N/A	MFSLKLLQSYSEDSLSEQHSESLRSIIIKDNEHXKIDDILNFRCYQEXIQYKVKXTNLNKDNEXYYVDKEKFNDSEKVLNEFHKLYSNKSR
Ga0272425_100005988	F006206	N/A	LLQFQFEFQFKKLVISSKVIEEIEIISLCKLDEILLKENYFEKSFLIDAHLISQNQSFSLRSLINSDSVIYMIVHSNLVDKVCEKLRIQPISLAKEKLIRDYDEKISKKIITHKILFNLIIESHKKLTVLMLITDIDHHEVILSKL
Ga0272425_100005989	F033266	N/A	MFSHLSTEERSEEFRNRFSQISDADSLKSRTKSSSAASFIHEDDESFAETIILFVFYKIXKAXSLALDEETDQLYKLNIQQEDEIKELKTRLQAKENTSSDFIYSERFRSQKIPDSSLFTDEKNSICEN
Ga0272425_100005993	F091080	GAG	MSQECMNLLLLCXFRQVINKNIISFLCSCIMINVYKACVIDFXSEVSSYNQIDFDFNNDIDXISKHSHSSDIKDASMKVMSMTSVSIRARNLNIFSRLFKIISTVNDLKLNESSDMLMKQNMSISLSVTTLTKAGRFSNLQRFHALELF
Ga0272425_100005994	F042102	N/A	MTRSSESASIACYDFQNARRESLLSQNQTASEEEDMNASSDTEEENMNVLLFDHEMIKISINTELNAXISVHEADDIIVFIKYICQQHDIKIKIHNDIIQMLKDINEINITLKIMQTCLQKENRDKNVIIHYLKVASSXQSTSISENQSSKLIKLFNSSLFKDSLQNVNNXLSRMQNKLKINKNHFSIKELKIAYIESXVSEAAIKHIASRMRNTSLNFFLEVEEVLSIINKMYDDLNHHHTTQQQYLKLYQNKIFFHKFXMKFQRFSAELKYNNETLLNDLQHKISSDLQXAMLNEXITNLNEFVNICMQVNVKLIELNVXSVVKASMTQAAQSVFNTLTAQLTSSISSXKKFRRSNLNFIQKELFKKELCFKCKKLKHKAYDCFKIIQVHEIVANSKNDLLSSK