Scaffold Ga0272425_1000049

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000049
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 203680
• Total Scaffold Genes: 222
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (25.68%)
• Novel Protein Genes: 21
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (28.57%)
• Associated Families: 18

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F006206	Metagenome	378	Y
F008115	Metagenome	338	Y
F009580	Metagenome	315	Y
F024448	Metagenome	205	Y
F033266	Metagenome	177	Y
F037509	Metagenome	167	Y
F048685	Metagenome	147	Y
F057010	Metagenome	136	N
F070710	Metagenome	122	Y
F070712	Metagenome	122	Y
F074202	Metagenome	119	Y
F074203	Metagenome	119	Y
F094624	Metagenome	105	Y
F096306	Metagenome	104	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_10000491	F057010	N/A	MIDVIERQNNTRKSIESTARLIELLDDLQLIKYASFTSINRINDKESSLIARESNRSRESINSQIKQQKXLHLLLSSIILRSISFLLKHLFNSISSSFFIMFRFFKEHFEASFFIVEDNDSFAEIITPSMTMKALKKRCEELKARLQAREITSSSSIYSEHSRFQKILDSLLFTDEKNSIXKNXYEKVQNKLKINIDLFSSEXVKLSYVHFRLFNDAAEITQSKRERDCFNSYKIVDELLKELAQLFNDSDKEVNFCRNYYNLIQEQKKFSEFYTQFQRLFFYLNYQEKQLIVDLKNKINLXLRFAXVTQLIQLSTLKEIRFYLIXLNNNQRAIXEIKNREAMIKAKTTKQIIFVKESVKATHRIIEMKMTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSLNFDSESDSKN
Ga0272425_1000049118	F000597	N/A	MKDVLISSTTSMSDDFFASESLTIECVLSSNEINYSLKSLINIEAADYSFINEVIAQIVCDQLQIESLTLIKAKSIQEFDDHYVKKLITHVIYSNLTVQDHIIDIAFMLITXLD
Ga0272425_1000049129	F002432	N/A	MXKSFCRQLRITASLFTVYHSEIDDQSKXVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSITSMTLFYFNKEFHPXMSFDSNTTDYETTHEXLEARKADNIIIXMKELLSFDRQQLKKTKLIIEVQINKHKXDVIYKVDNXVXLSFKNVKTTRLCKDLKDKQLSLYQITAKVSIFYHLHLSVSMKHLHSMFSLKLLRPYSEDFLSEQHSESLRSITIKDDEHXKIDDILNFRRYRGRIQYKVKXTDLDRNDEXYYVDKGKFNDSEKVLNEFHKLYSNKPR
Ga0272425_1000049130	F024448	N/A	MKDVLISSTTSMLDDSFASESLTTECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIKLLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITQLDQHQMILEKTXMNKINLVIDMQINFLRFSNFTSNQKSIVLLTSNKTITKQKNLTSTYILKRSFTTSQPSLKSLSFSQFNEKSVKLIKQLKCQNRV
Ga0272425_1000049148	F070710	GAG	MINQKTRQILNDXKHSKSLLFTESTTATNNFMIKQSFLQILQYNIRKSLKIQKSFLINREVRDFNIVIIQKQSYNINNTQLFNSAHNFFYLVKNTSSQSRTCIYVNKHLKLNQXMIEIAESNICLIRILTHNTDDETQTLQLINVYNSCSLFFTFTKKSLIIFRLSELLKDNCKQLIMKDFNLHHSHXERRRCFT
Ga0272425_1000049152	F048685	AGCAG	MRXIQKLADFNFKIMYQLNKQNIKINALIHQVNVVLKDLDDECIHYQXITILMLNXMKIADLKKNISESIYKQILETNRINKNCTLLREAIARDKT
Ga0272425_1000049158	F000597	N/A	MMKDVLISLMISMSDYSFASESLTTEYVLSSNEISYSLKSLMNIEAADYSFIDEVIVQIVCDQLQIESLTLIKAKSIREFNDHYAKKLITHVIYLNLMIQDHMIDIAFMLITXLD
Ga0272425_1000049171	F074202	N/A	MKLXIFKMCVYEXSLFTCQKEIYMYVKKCLQLFYHXLRSQSLFLTKLLGKCVSNFMKTVNCKMNCKTIYISFLLMSSCLLCSDNAFNLTLFLNDDFFLKLVISKLRLHVETELDFKEEVILRCSFFTAKDDDLDSSFNLKTATNFIKFLXFTIFHNDXSSFFNLFLSVKCDVTRLKXADAENQAFKSEVLVNLAVLSNVNNVSFSKFKNLDCEDVMKRLTSIASLFFSSDIVN
Ga0272425_1000049181	F096307	N/A	MLYIVVTQIDASLKENVLKHKKDVNLKDVCDTKKCVCHRNLLIIRNTKKCVYLEDNRSXLEDTRKEKRCXVISESNLSQI
Ga0272425_1000049188	F094624	N/A	MKHYLXVFVNYMQNDXAKXLSEVEFIINNASSLITLASFFLINLSQNLRLDFKFSESLLKNLTFQAXNKLINVKEFIKKMKKLTEHLCDEMLITQIIYEFNVNLSRHSCFKYFVEDEVXLNICNLSIAHLVVKLNDCNIDFFKIKHVFKNNSLIIKLNLSAFMKIHSIFHVILLNHITSDLLSNQHQKF
Ga0272425_1000049195	F009580	AGCAG	MIEVRVKRLKLVDKMIYIQISEHDLAQKLNFFCKQRDFFIYIDNVIVVNVHDMQSEELFIXAFFSNFAXMLQFAVVAQLSLVTDFLDLRNDQSFILNDDNDEV
Ga0272425_1000049207	F096306	N/A	LNTLSSLYDIKTMFAMYDNCAVDSLIIDDNFNEERLCKDNSELHASMILFNIAILIVTNVKIVFVESNNK
Ga0272425_1000049213	F001951	N/A	MKFRFIDSSRNEKEKDKDTVETTVTKMMIFKLKELLVNAKTSLTLMNETIMKMKRD
Ga0272425_1000049220	F033266	N/A	MSSHSLTEECFEEFRNRFSQTSDADSSKPRTKSSSAASFIHEDDESFAETVILLVFYEIXKARSLALDEETDRLYELDKQQEDEIKELKTRL
Ga0272425_100004947	F002432	N/A	MQNDXAKXLSMMKFSENFNIFSIISMILFYFNKEFHSXMSFNSDTTNYKITCERLKARKVNNIIIQMKELLIFDHQQLKKMKQIIEAQINKHKXDVNYEVNDXVXLSFKNVKTTRSCKDLKDKQLELYQIMIKVEIFYHLHLLISIKQLHSVFSLKLLCFYFNDFLSEQHSESLRSLTIEDDDHXKINDILNFRRYQDXIQYKVKXTELNRDNEXYYVDKEEFKNSKEVLVEFHKLYSDKSH
Ga0272425_100004950	F008115	N/A	MNFITELLLSEDYNVICTIICHLIKERHYVSCHXEDDDISVEEMIXIMLXNVYRLHDLLSSIVSNRDFQFISTMXKSLCKRLRITASLFTVYHSKINNQTKQVNQDVECELKIYCNYMQNDXVKXISMMKFSDNFNIFSIILIISFYFNKEFHSRISFNSDTTDYETTHERFEARKADDIVIQMKKLLSFNCQQLKKTKLIIEVRVNKHRRNVIYEVDDXVXLSFKNVKTMRLCKDLKDKQLKLYQITVKARIFYHLHLSISMKHLHSMFSSKLLRSYSEDLLLEQHAESLRLIIIDDNDDEYXKIDDILNFRRYQGRIQYKIKXKDLDKDNEXYYVDKDEFNDFKKVLNEFHVLYSRKS
Ga0272425_100004957	F074203	GAG	LKLSSAESFINEDDKSFAETVISSVSIENXKTXCIILDRETDXLNELSKQXDNEIKKLKTKLQTKEITSSDFTYSERSRSQKIPDSFXFTDEKNSTXENXYDKIQNKLEINVDLFSNERVKLSYVHFRLFNDAADVAQSRRKHDCVNFYKIINNLLKELAELFNDSDKKVNFRREYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSRLRFI
Ga0272425_100004963	F037509	N/A	MILISLLIQIHSTDNETSIKKFVYLMIDDIERQNNIKKSIKSTKIYDHXIAREFIAQSVALVQIN
Ga0272425_100004987	F037509	N/A	MILISILIQINSTDNKTSIKKFVYLMINDIERQNNIKKLIESTRTYDHVIAREFIAQSVASVQIN
Ga0272425_100004990	F070712	GAG	MNDIKEKKFLIKVRKQVIFAETXDSLNLYRKIEVTTLVDHSKSCDVILINVKDIDLQAEICFTCHKSNHIFKECSDQSSRVNALDDENEFDCLSFDSDSNSKN
Ga0272425_100004991	F006206	GAG	LCNQVEVLLEENYFEKPFLIDVFLIAQNNSFSLRSLIDSDFVVYTLIHDKLVNKVCQKLEIQSMLLAKEKLIXNYDEKLARKTITHKILLNLMIESHKKLTVSMLIADIKHHEAILSKFXMNKNEILLNMRHDTIVFSD