Scaffold Ga0272425_1000036

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000036
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 219672
• Total Scaffold Genes: 243
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (26.34%)
• Novel Protein Genes: 33
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (18.18%)
• Associated Families: 31

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F005901	Metagenome	386	Y
F008169	Metagenome	337	Y
F008735	Metagenome	328	Y
F009377	Metagenome	318	Y
F009580	Metagenome	315	Y
F010214	Metagenome	306	Y
F013598	Metagenome	269	Y
F017767	Metagenome	238	Y
F020121	Metagenome	225	Y
F021896	Metagenome	216	Y
F028978	Metagenome	189	Y
F033265	Metagenome	177	Y
F033266	Metagenome	177	Y
F036035	Metagenome	170	Y
F036994	Metagenome	168	Y
F037508	Metagenome	167	Y
F038484	Metagenome	165	Y
F044226	Metagenome	154	Y
F046102	Metagenome	151	Y
F055318	Metagenome	138	Y
F064252	Metagenome	128	Y
F068292	Metagenome	124	Y
F079402	Metagenome	115	Y
F080690	Metagenome	114	Y
F086377	Metagenome	110	Y
F087978	Metagenome	109	Y
F096307	Metagenome	104	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000036100	F020121	GAG	MKKLTEHLRDEMLIAQIIYKFNVNLFHHSCSRYFIEDEVXLNACNLSIAHLAVKLDDHNIDFFKIKRVFKNNFLIIKLNLSAFMKIHSIFHVIFLSHITSDFLSNQHQKSQELVIIKNDKRFXYVNSILNFKRDRCYNSSLLKYYIDXEDHFFTXESFHLLNNCEQMLNEYHLVNSVIEESHVLSCVMSQCQCQEL
Ga0272425_1000036110	F087978	N/A	MFSLKLLQSYSEDFLSEQHSESLRSITIEDDEHXKIDDILNFRRYRGRIQYKVKXTDLDRNDEXYYVDKEKFNDSEKVLNEFYKLYSNKPR
Ga0272425_1000036111	F033265	N/A	MFSVIEKTMTSQSKKRFESCYETSIDCMIYSVLLFXTETFNSYQLCERVFADDXESQLVYSQSIILRSTINRNKSIKTLNANLEFTAITCRTTESNKYLXXNSATISISSRSLQXFSSTLIKNFTFEXVSIQIRLTTKQLVNDLKLEKQMILSFEXKSYXASIVNNXKKRSXSLKFRSININETSFMK
Ga0272425_1000036115	F008169	N/A	MFNRLSTEEHFEEFRNRFSQISDADSLKLSSAESFISENDESFTETVILSVSIQNXKARCMILDREMNRLNKLSNQQDDEIKELKTRLQTKEITSSDFIYSERSKSQKIPDSFXFTDEKNSTWKNXYGKIQNKLEINVDLFSNEXVKLSYIHFRLFNDTADVAQSRRERDCVNLYKIIDDFLKELAELFNDSDKKVNFRRKYYNLVQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLXFVXIDQLVQSDSLKEIHFYLIHLNNDQRAVXEMKNKVNLIKRVDDLSKIIFHKAVVTQSVNHSKSDYLKPRDAILTNVKKADVLVETCFICHKSGHSSRECLDXSTRINAVNNEYDRFDFDLNFDSKN
Ga0272425_1000036117	F010214	N/A	VSVLFIYDASSLLCSSLMIFYTTMFRSDSQFKDERCFLCIRDARDCNIRRAAFSCSMIVIHCAEKYVMKERCTXXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXSMKENAFXSFSXALDFSRRQIYDLMSSKEDELKSSQYISVIDESLLLQAL
Ga0272425_1000036118	F104134	N/A	MLSLLSLQSDTIRSLXSVNISAILCRICLINFFCIFSISLLFIILIMTSHFLRSDDKSSLRRCSFVAISSLVTFAHDVIFVERRVFLCVCNCLLSSXTDVFSFCTFFAMNVFXFAXCFSSESSRRCXISFNAIFFHEXSLLFSFSNVDIFISKSIMLATFSSSSCEHFNSASLFSCNESTSLAIVFKSALLQFVQFIIIQSSSRFTLSCL
Ga0272425_1000036123	F038484	N/A	MYIARVLSAFXKSSCIFIILLLRCNLCTEIVLMFATRSLYFSHRXFHXSLXYCIITMLSLVKIIVKKRMYHLHLNCIFASSQMKTFRSTIFLMTSKREMMRLTFVKXACISSHAYLISCVRLLTQLCNMILFCNMFRXTCNKLMYVSVFKVSMFTLLNASATXRRVXFXSVSSLHSLLNSSSFLSRXCQIDASNAISDLTTAEYTCLTFVKIAFHVKTLRQLSVSILVTXFIFICRRCVFHCSFVFSCTFKTCTSDFDLITELSICMLIIMLNLFDFLVKCVSLYFSDANVASXVQTHFAQTLYALLNVLQISSVNLS
Ga0272425_1000036131	F036035	N/A	MKDDAMXREHHELKKASRNYEHDNSNYSNDILDKHTESISDCDIIEESDERERK
Ga0272425_1000036139	F005901	N/A	MNNKLIFNVNQFNDETIYIIYMMFRLKDDAAKYIFAXRCFNSLNSFISIYKLFDHLNEIYNELNKNQKSXREYNALKQADKFFNIFYFNFMKLFSYLEYNDCTLMNDLQNRINNRLQNTLSVCLKNFTSLIHLRIFLQDVNNKQXVNYQLRSERCTVIIKVTVISDKCIATSLSMTTLIINYVKFIISFIFESARSSIICYTCKTSSHLSKNYSQNKINTSAS
Ga0272425_1000036140	F017767	N/A	MKDVLISSTMSMLNDSFASESLTTECVLSSNEISYSLKLLIDIKAADYSFINEVIT
Ga0272425_1000036158	F036994	N/A	MXNRKIIEADSLVDLLIEEIDYRLVIEADSLVAREREVDQFTDR
Ga0272425_1000036169	F013598	N/A	MNFIIDLFNSSEYNAILIIICRLLKERHYISYIIDDEDITVKKTAEMLIQ
Ga0272425_1000036177	F096307	AGAAG	MLYIVVIQIDVSLKENVLKHKKNVDLKDVCDTKKCVCHRNLLITRNTKKCVCLEGNKSXLEDARKEKRCXVISESNLSQI
Ga0272425_1000036183	F000597	N/A	MKDVLISSMINMSNDSFASESLTIKYVLSSNEINYSLKSLINIKAADYSFINEVIAQIVYDQLQIESLTLIKVKSIREFDNYYAKKLITYVIYLNLTVQDHMIDITFMLITQLNQHQMIC
Ga0272425_1000036185	F037508	N/A	VIFRLEDDADQQIYTKHHVDAFSLYQSLLKLLKHLKEIYKDQNLIXKCCCKYVALKQLNKFFSSFYSEFTKIFSFLNYDDVILMNNIQNKINNHLQNMLSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDE
Ga0272425_1000036206	F080690	N/A	MKSLHNFLIEDERAVEQFTQSMIENSVEIFRAMQELQNQVQQHDVIILFLFIIFSSSVYIELNSQSLAMIAQIITQILNNQSLLVIHLFVNSVTVFIASRFEKLFDIFEYERNKDRLNAXEQSLIQRMNVNDDCYLSHXVKIIYVESRLIINKKTHNLMSQYQVNDLCIIFIFADXQHKLHHYCNNSFKTEDAHLYLREILKQDMNSFVNYYNLFYQKKECSLMKDFSLIDCLRRNVNYF
Ga0272425_1000036208	F001951	N/A	MTKLKFIDSLRNKRERDEDTVKTTVTKMMIFEFRKLLVDAEMLLTLMNEMIMKMKQDXXCLSC
Ga0272425_1000036209	F009580	N/A	MICIQISERDLTQKLNFSCEQRDFFIYTDNVIVIDVHDTQSEELLIXAFFNNFAQMLQFAVVTQLSLVADFLNLRNNQSFILKNDNDKA
Ga0272425_1000036217	F009377	N/A	MTRSTELESESVSMTRYKLQNAERESLLSQNQTASEEEDMNALLNIKEKNMNVLFFDHEMIKISISTELNAXISTHEADDLVAFIKYICQQHDIEIKTHNDMIQMLNDINKINIELKAINIELKATQITLNAVXTCLQKKMKKKNVIIRHLEATSSQLSTLISKDXFSKSIKLSDSSLFKDSKQNVNN
Ga0272425_1000036218	F086377	N/A	MIQRFXDQKQRISILDCDSIQILIVHAEAKFFFKFLDEENRDNRLKATDLNEIFAQIFIQITTKF
Ga0272425_1000036220	F021896	N/A	MKNNLESEDFLKSVECNLTFLKSDKEYIFSDEMSERDSYSTIVINESSIEVREI
Ga0272425_1000036233	F064252	GAG	MLIELRDQQDMTLKLNKQXINLQVNHIKRLNELEINQTTINTQEETIIELRKKVLSLKKKQRSANQSRSQQSMKSXAFIKNYTXRESSILFNNDYHKFFKFLNSFIFTDEDESTXNSXRIKINDKLQTNINHFDNENICIAYVIFRLEDDAAEHIFAXCQHDASHSYISINELLEHLKEIYDELNRNRKCCHEYNALKQADKSFNIFYFNFMKLFSYLDYDDCTLMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQDINNKQRVNYQLRSQLRTVIIKVTVISEKRAATSLSVMTLIINYVKSIIFSIFESD
Ga0272425_100003649	F096307	AGAAG	MLYIVVTQIDASLKENVLKHKKDVDLKDVCNTKKCVCHKNLLITRNTKKYVCLKNNRSXLENARKEKRCXVISESNLSQI
Ga0272425_100003651	F044226	GAG	MMKFNENFNIFLIISMTLFYFNKSFHSXMSFDSDMIDYKTTCKHFEARKADDIAI
Ga0272425_100003657	F002432	N/A	MKFSDNFNIFLITSMIFFYFNKEFHFXMSFNSNMTDYEITCEXLEARKANDIIIQIKELLNFDHQQLKKTKLIIKVQINKHRXNVTYEVNDXVXLSFRNVKTTRLCKDLKDKQLDFYQITAKVSIFYHLHLSVSMKHLHSMFSSKLLXLYSEDSLSEQHSESLRSIIIKDDEHXKINDILNFRCYQD
Ga0272425_100003661	F055318	N/A	MLRDDEALCIDHMQSFRDHVDFNNLNVHVTSNLHADEKVK
Ga0272425_100003665	F046102	GAG	VTFIKDVMKDVLISSTISSSDDLFALKSLTTECVLSSNEINYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKFLSLIKLKSIREFNDHYAKKLITHAIYSNLTVQDHMKRFIFMLITQLDQHQMILEKTXMNKIEMTIDMKDDHLQFSSFEAYIKAFIKAHSTVFSSKKIAIEQKSLIFTQILKKSTSSVIIXLSKKSSSFS
Ga0272425_100003666	F068292	N/A	LKCTIATQLAEQRVNQKEAHFQXEFSTLSDNENENNYHKFIKLSNSLIFIETDDSIXKTXNIKIADKLDVNANHYSTEKIHIVYVIFRLEDDADQQIYAKYYVNAFSFYQSLSELLKHLKEIYENQNLIXKCYCKYIILKQLNKLFSSFYSEFTRIFSFLNYNNVILMNDIQNKINNHFQNALSVCLIKFSSLDKLKIFLQDVNNKQXVNYQLRDEQXTVKSIAASKKRFISSLTSTSVSTTSYV
Ga0272425_100003676	F033266	N/A	MFNYSFIEEHSEEFRIRFFQIFDADSLKSSSAASFIHEDDESFTDIIILFIFYEIXKTXSLVLDEETDQLYELNKQQEDEIKELKTRLQVSXF
Ga0272425_100003683	F079402	N/A	MQNKLKMNKNHFSIKEMKIAYMKSXVSETIIKHIALRMKNMITNSFLKAEEILSIINKMYNDFNQHHMTQQQFLKLY
Ga0272425_100003686	F008735	N/A	VSLLIYDESXLDINDLDLMREIMIIVHVHVLYQTLLSCIQLIFVFLILKYVKKLLESKSNDDSNRICRKMNDERRLIVQDLCNDLNYHCKRLRIQFYINXRTKNDERKXNDNIMLSNLILKLLHYVKDLNXIFDHTLSELFNNMLIIN
Ga0272425_100003689	F086377	N/A	MIQRFXDQRQRISILDCDSVQISIVHAEVKFFFKFLDEKNKDDYLKVIDLNEIFAQILIQIMMKF
Ga0272425_100003694	F028978	N/A	MKIADLEEKENNESIYQLILEANRINENCILLREVILKDEAQYKDIKLRNCRVQNEILYRDDLL