Scaffold Ga0272425_1000007

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000007
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 300946
• Total Scaffold Genes: 295
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (24.41%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F007840	Metagenome	343	Y
F008668	Metagenome	329	Y
F010214	Metagenome	306	Y
F021216	Metagenome	219	Y
F025887	Metagenome	199	Y
F028978	Metagenome	189	Y
F033265	Metagenome	177	Y
F036504	Metagenome	169	Y
F042102	Metagenome	158	Y
F057011	Metagenome	136	Y
F064254	Metagenome	128	Y
F086375	Metagenome	110	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100000711	F008668	N/A	MTLFYFNKNFHLQMSFNSNMTDYETIHECFKARKANNIIIXMKELLIFNHQQLKKMKQIIKVQINKHKQNVIYKVNN
Ga0272425_1000007116	F010214	GAG	VLFVYDASSLLCSSLMIFYTTMSRFDSXFEDERCFLCTHDARDCNVRRAAFSCSMIVIHYAEKYVMKERCTRXKDRVXLYXVTLFFSXFDLCHVDVEXIVSIDVRLQSFDVXLXLMKENAFXSFSXALDFSRRQIYDLTSSKEDELKLSQYISVIDKSLLLQAL
Ga0272425_1000007117	F064254	N/A	MLLIFKSFLKFMMFSLHCIIFHSIFHFKHVNRMCLINIQSLSYLHVIVATSSTYLLYKNXLKSIFLMCSCVNNALXDFAXFLCSHKCXCVIFDVRYXKXAVLNLSFQTILHVCLICFCMSVNLIITSMHXCSVSNKDKSCVSSIILFITSFSSTSAYFVT
Ga0272425_1000007129	F001253	GAG	VTFIKDVMKDVLISSTTSSSDDLFASKSLTTECVLSSNEISYSLKSLIDIEAADYLFIDELIAQNVCDHLQIKSLPLIKLKSIREFDDHYAKKLITHAIYLNLTVQDHMKRFVFMLIT
Ga0272425_1000007132	F028978	N/A	MKIVDLKEKENDESIYQLILEANKINENCILLHEVVLKDKAQYKDTKLRNCQVQNEILY
Ga0272425_1000007134	F021216	N/A	MKSRMKSNAMKREHHKLKKALRNHERSDDDHSNDTLNEHTESISSCDVIKESDEKVLKICLKXVR
Ga0272425_1000007158	F007840	N/A	MIDAIERQNNTREFIESTARLVELLDDLQLIKYASFISINRISDKEPSLIARESNRSRKSINSQIKQQKRLHLLLLSIALRSISFF
Ga0272425_1000007170	F033265	N/A	MFSVIEKTMTSQSKKRFESCYETFIDCMIYSVLLFRTETLNSYQLCEKVFASDXESQLVYSQSIILKSTINXNESIKTLNANLEFTAITCKMTESNEYLXXNSATIQIFSQSLQXLSSTSIKNFTLEXVSIQIQXTTKQLVNNLKLEKQMILSFKXKSYXTSIVNNXKRRSXSLKFKSINIDEMSHMK
Ga0272425_1000007177	F042102	N/A	MTRSTESESVSIARYDFXNVRRQSLLSQNXTASEEEDTNASSNTEEENTNALLFDHEMIKISISTELNAXINIHEADDIVIFIKYMYQQHDIKIKTHNDMIQMLEDVNETNITLKATQTCLQKEMRNKNVIIHHLETASSXQSTSISEDRFSKSIKLLNSSLFEDSTQNVDNXLSXMQNKLKINKNHFSIKELKIAYIKSXVNETAVKHIATQMRNMITNSFLEAEEILSIINKMYNDLNHHHTTQQQYLKLYQNKIFFHEFXMKFQRFSAELEYNNETLLDDLQHKISSDFQQATLNERIMNLNEFVNICMQVDVRLTELNAXLIIKVSMISAAYSVASTSSARSTLSVSAXKKLRRLNLDSIQKELFKKELCFKCKKSEHKAYDCLETTQVHEIAANSKNDLSC
Ga0272425_100000738	F094625	N/A	MKSSYNLSINDEHAVEQFAQSMIENSVEIFRAMQELQNQVQQHDVIISFSFIVLNSSIYIKLNSQSLVIIFQIIAQILNNQSLLVVHSSANFVAVLTFIKFEKLLNIFEYEKDKDQLNVXEQNLIQCMNVNNDHYFSHRVKIIYVESRLIIDKKTHNLMNQY
Ga0272425_100000742	F036504	N/A	MPRQDTQSAEQXVNHEEASTISVSICCSEVEXSSTFEAHSQRESSTLSDNENNHHKFIKLSNSLIFIETDDSIXETXNIKIANKLNVNVNHYSTEKIHIVYVIFRLEDDADQQIYAKHHVDAFSLYQLLSKLLKHLKEIYEDQNLIQKCHCKYIALKQLNKLFSSFYSEFTRIFSFLNYDNITLMNDIQNKINNHLQNVLSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDEQRTVKLIAASKKHFVSSSTSASVSITSYVQLITFFTLESEXSRMSIICFNCKVLNHFSKNCSQLKTSTSTSCAFISCLNEIIMSKEEKKLFTEKSKNKAKN
Ga0272425_100000745	F033265	N/A	MFSVIKETMTSQSKKXFESCYETFIDCMIYSVLLFQTETLNSYQLCEKVFASDXESQLVYSQSIILRSMINQNESIKTLNANLEFTAITCRMTESNEYLXXNSATISISSQSLQXFSFTSIKNFNFEXVSIQIQLITKQLVNDLKLEKQMILSFKXKSYXTLIVNNXKRRSXSSKFKSINIDETSHMK
Ga0272425_10000075	F057011	N/A	MSLIDLHXTLNQILIQKTSYLFQNHXKDKDYIFVQLNXSSIKKNYFEKSFLINASLIFQSNSFNLRSLINSNFIIYTLIYNKLVNKVCQKLEIQFILLAKEKLIQEYNEKLARKTIIHKILLNLTIKSHKKLTVSMLIIAIKYHEVILSKLXMNKNEILLNMKHNTIIFSDQLNISISIFSISLNIKHSSXLQSTFTSLMTYNNASKILKHSVLIIQKKSFLIQNINVVSF
Ga0272425_100000770	F086375	N/A	MFTLFVNSKIIASXNCGENXFNEIKEHYKRQNNDRMIIFKXLHKLRQFNVXKEVNEIDKAAMKDNVKDEVEQEXKNKDIHDNAFQ
Ga0272425_100000774	F025887	N/A	MSDDSFDFKSFTADIILSSLEKIFRFFALIDTEVTDMIFIDKSLMSELCECFDIQSISLSKSKLIRSYDEISDQKEIKFX
Ga0272425_100000775	F042102	AGAAG	VSIAHYNLQNVKRESLLPQNXTALEEEDMNASLNTEEKNTNALLFDHEMIKISINTELNAXINTHEADDIVAFIKYICQQHNIEIKTHNDMIQMLENVNEINITLKITQTRLQKENRNKNVIIHYLEAASSXQSTSISEDQSLKSIKLLDSSLFKNSLQNVDNXLSRMXNKLKTNKNHFSIEELKIVYIESRVSKAAIKHIASRMRNTFLNLFLEVEEVLSIINKMYDDLNHHHTTQQQYLKLYQNKIFFHEFXMKFQRFNAELKYNNETLLNNLQQKISSDLQXATLNKXITNLNEFVDICMQVDVRLTELNARSVVKASATQAARSAVSTSTTQLTSSVSSXKKLRRSKLNFI