Scaffold Ga0272422_1018044

Overview

Basic Information

• Taxon OID: 3300031452
• Scaffold ID: Ga0272422_1018044
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5216
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Corynesporascaceae → Corynespora → Corynespora cassiicola → Corynespora cassiicola Philippines (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010658	Metagenome	300	Y
F020636	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272422_10180442	F010658	N/A	MTKALVKRKEYFIQKKLNAYNLVIVDKNLLFVENEKVNKETKLLSIAI
Ga0272422_10180443	F020636	N/A	MTMFRRDFKNNLKNEIMCDEKFISDIFDLIEVVIDFDDKLYKKAMKKRYD