Scaffold Ga0272422_1014352

Overview

Basic Information

• Taxon OID: 3300031452
• Scaffold ID: Ga0272422_1014352
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6199
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016760	Metagenome	244	Y
F029944	Metagenome	186	Y
F036995	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272422_10143522	F016760	AGTAGG	MSITNGIKRAARATGRGVYVLAVPKTVRRSTDEMRRVEMSPALGLVLRIAAVLVLAGTVLAVHAVGHPLLGLARAALLLIGAVVMLALSGALAPQGRLLGRLLLSYTKRESARRGLTWRGRLFRALARRLEPATPEKEKGKTDDRQR
Ga0272422_10143526	F029944	GGAGG	MDHRIGGSLAYTVDGQGRVLSVREAMSADPATACADAPPPIAPRTLVAPLSWEPVQRLLAWGAREGMTAAELLDTCRAATRPSTRRRRRSAR
Ga0272422_10143527	F036995	AGGAG	MTNAARDERDIAPYDGTLAGGPEGQALAIDTPPPDPGLDQEVTYDTREPDGYGPDDDRWQPITDPAEIAAIQGAVAQGIDPPYEVWVDPAPAALGPGDVTPDGADQTAYDAWEQTGPRPGDGQLYEVTDPVVIAAYAEGRPEPHDIEIINPADDDEAAATPDLTLYNAQIDALTGTGATWIEVEGTGDGFTLGRYAAGPVERDTNGWEPVRVADGPDDGPTGNVYPDAATARQAAIAYNGADLAGTQLDLDPGPVAALDRDMTPALDLRDMTPALDL