Scaffold Ga0272422_1001752

Overview

Basic Information

• Taxon OID: 3300031452
• Scaffold ID: Ga0272422_1001752
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29648
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -74.2
  • Long. (^o): 162.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021684	Metagenome	217	Y
F054461	Metagenome	139	Y
F061397	Metagenome	131	Y
F096304	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272422_10017521	F061397	N/A	LCKDKQETLIKDLAAIFKMKNTFLIDKKLIKICYNIXVSEHLEVKXMKDFI
Ga0272422_100175210	F096304	N/A	MKTVLGREKTAAVERIFRKTFKRERTDVDEKKKENNAADIEKDTKAFKLAHYXKSDSKLNFNIQYNI
Ga0272422_10017525	F021684	N/A	MYNKHSKTIIEALEXDEVYIIKYIVKSLNEFVLISIMYTLHLKTVFSVTASDVSLYV
Ga0272422_10017528	F054461	N/A	VKSLNCVVYEHIFVEKVTEEVKRMLTIVNVSRVFTQPLILVLLYFIEVARTSLLNSYLL