Scaffold Ga0272426_1136459

Overview

Basic Information

• Taxon OID: 3300031451
• Scaffold ID: Ga0272426_1136459
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Siegfried Peak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 889
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Trebouxiales → Trebouxiaceae → Trebouxia → unclassified Trebouxia → Trebouxia sp. A1-2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.57
  • Long. (^o): 161.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066294	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272426_11364591	F066294	N/A	VHLSWLTAHLYEEQFSIGAIAVTQACCEPVLQSNTEQWGIYFAQTSIALHLSWLTAHLYEEQISTGAVAVTQACCEPVLQSTSEQWGMQFDQTSAGLHFCWLTAHLYEEQFSIGAIAVTQACCEPVLQSTTEQWGMHFA
Ga0272426_11364592	F066294	N/A	VHLSWLTAHLYEEQFSIGAIAVTQACCEPVLQSTSEQWGMHFAQTSVALDLSWLTAHLYEDKIFRGAIAVRQACCEPVLQSTSEQWGMQFAQTSAGLHFCWLTAHLYEDKISTGAIAVTQACCEPVLQSTTEQWG