Scaffold Ga0272433_10083658

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10083658
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2155
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034417	Metagenome	174	Y
F058564	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100836582	F058564	AGGAGG	MTPIGYAMIGHPFCVPCVDSDFDRAPDGAAYARDGQPVADDVTPIHAGDPDDGAPCAGCGLPLAAPPEARVVWTCPECGSTDLRAFYSERRTCRVGARDDTGDPADAAPWPTYESDDFVDIDPALFAFACDACHTHGITPHKGGDTHALGRDQAA
Ga0272433_100836583	F034417	AGGAGG	MPWAVTKPHSAWLAQATDAWAALTPQAPEGAQLRALAAIDHDNFARLIEALAALTPGEMSQELQDLAGLRPVGEVLGMPDRSDVDDGGDAEDW