Scaffold Ga0272433_10061010

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10061010
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2725
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F087980	Metagenome	109	Y
F096306	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100610102	F001951	N/A	MMIMTKLKFIDSSRNEKEKDEDTVEMIVTKVMIFEFKKLLINAEMFLTLMNEMMMKMK
Ga0272433_100610103	F087980	N/A	MKSSYNLLIDDERAVEQFIQSMIENSVKIFHIMHELQNQVQQHNVIISFSFIVFSSSIYIKLNSQFLVMITQIITQILNNQSSFVIHLFANSVTVFITFKFEKLLDISEYEKNKDQLNA
Ga0272433_100610104	F096306	GAG	MYDNYAVDSLIVDNDSNEEKSCKDNSELQASMILFNITILIATNVKIVFVESNDK