NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10053651

Scaffold Ga0272433_10053651


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10053651 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2989
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035571Metagenome171Y
F044227Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100536513F035571GAGMMQITLIKXAHISLHACLISCIQLSTQLCSMILFCNMFRXTYSELVYVFVFKVLMFTLLNTSATXCRIXFXSVSSLHSLFDSLFFLSRXCQTDASNAISDFTTAEYTCLAFVKIVSHVKTSKXLSVSILVTXFISICXRCASHHSFMFSCTSKTHTSDFDLITELSICMLIIMLNLFDFLVKCVSSYFSDANITSXVQAHFAQTSCTLLSVLQISSVNLL
Ga0272433_100536514F044227N/AMQLQMKSLDDEACTHALLELIAFAIKNVTKCRFLELLNNHHYHEKFQSSSEDDDENKALEAI

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