NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10041928

Scaffold Ga0272433_10041928


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10041928 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3575
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100419281F002432N/AVNQDVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSIISMISFYFNKDFHPRMSFDLDTTDYKIIRERLKARKADDIVIQMKELLNFNHQQLKKTKLIIKAQINKHRRDIIYKVENXVXLFFRNVKITRSCKDLKDKQLESYQIIVKARIFYHLRLSVSMKHLHSMFNLKLLQSYSEDFLSEQHAESLRLIIIDEDDDEHXKIDDILNFRRYRDQIQYKIKXKDLDRDDEXYYVDKEEFNDFEKVLNEFHMLYLRKSR
Ga0272433_100419284F102179GAGMTLAMXETHLNKVHFSRDRISQFESTTLKSTNVETLTHKDCNVAEKQLNSVAETVDCKQLISRAIVKVLTIHETTYNFSSKFIVKLIKILQQKDEFAVRLKADETTSIXKNDVKAXTLNSQEMIKYNKSLYVLRAYQDXTRLKL
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