Scaffold Ga0272433_10041200

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272433_10041200

Scaffold Ga0272433_10041200

Overview

Basic Information
Taxon OID	3300031450 Open in IMG/M
Scaffold ID	Ga0272433_10041200 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3624
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.87	Long. (^o)	160.75	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100412001	F000597	N/A	MKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKLLIDIKAADYSFIDEVIAQIVCDQLQIEFLTLIKAKSIREFNDHYAKKLITHVIYSNLTVQDYMIDTAFMLITQLD
Ga0272433_100412002	F003820	N/A	MKLFSYLEYDNHILMNDLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNSKQRVNYQLRSERCTVIIKVTVVSDKCATSLSITTLIINYVKSTIFSISESARSSIICYICNIFDHLFKNCFQLNKIDTSASCAFTSRLHEIIISKNKENKKMSFENNEAKN

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