Scaffold Ga0272433_10037512

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10037512
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3888
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F055319	Metagenome	138	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100375121	F087980	N/A	MKLSYNLSIDDEHVIKQFAQSMIENSVEIFRVMQELQNQVRQHDVIILFSFIVLSSSVYIKLNSQSLAMIAQIIAQILNNQSFFIVHLFTNSIAVFITSKFEKLFDISEYERNKDQLNA
Ga0272433_100375122	F001951	GAG	MMTMTKLRFIDSLKDEKERDEDTVKTTVTEMMIFELKELLVDAKMLLILMNEMMMKTKQD
Ga0272433_100375123	F055319	AGCAG	MIEVRVKRLRLVDKMICIQISERDLAQRLNFSCEQRDFFIYTDDVTVVNVHDTQSEELFI