Scaffold Ga0272433_10031560

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10031560
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4424
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028367	Metagenome	191	Y
F033265	Metagenome	177	Y
F048017	Metagenome	148	Y
F087978	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100315602	F028367	GAG	LCKLDEILSKENYFEKSFLIDAHLISQNQFFSLRSLIDSDSAAHTLIHANLVNRVCEKLEIQSISLTKEKLIRDYDEKISKKIITHKILFNLIIESHKKLTVSMLIADINHHEVILSKLXMNKNEILLNMQNDIIVFSNQLNTSISIFLIFLNSKHSSXL
Ga0272433_100315604	F048017	N/A	MSLANVSESAQRLEDCFQTILILDRVDVLLVEPKANLYQRVHMINQMNELCNEYRQAMNENKLKFHITKLKNCEIIDSVLFRKGLLXVFENMHTKLLQEVHDQSSISHLDNKQIIDLVQRFYY
Ga0272433_100315605	F033265	GAG	MTSQSKKXFESCYETSIDCMIYSVLLFRTKTFNSYQLCERVFASDXESQLVYSQSIIRRSTIRRNESIKTLNANLESTAITCRTTESNEYLXXNSATILISSRSSQXSLSTSIKNFTLEXVSIQIRLTTKQLVNDLKLEKQMILSFKXKSYXASIIINXKRRSXSSKFRSINIDETSSIK
Ga0272433_100315606	F087978	N/A	MFSSKLLRSYSKDSLSEQHAELLRLIIINDDDDEHXEIDDILNFRRYRDXIQYKIKXKGLDRDNEXYYVDKDEFNDFEKVLNEFHALYSRKSR