NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10024769

Scaffold Ga0272433_10024769


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10024769 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5320
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F038484Metagenome165Y
F104134Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100247691F002432N/ADXVKXISMMKFSDNFNIFSIISMISFYFNKEFHLRMSFNSDTTDYETTRKRLEARKADDIVIQMKELLSFDRQQLKKIKLIIEVQINKHRRNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKARVFYHLHLSVSMKHLHSMFSSKLLQSYSEDSLSEQHAELFRLIIIDDDDDEHXKIDDILNFRRYRDRIQYKIKXKDLDRDNEXYYVDKGEFNDFEKVLNEFHALYSRKS
Ga0272433_100247693F038484N/AMRSILMCIARMLSAFXKSSRIFIILLLRCNLCAEIVLMSATRSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKRVCRLRLDCIFASSXMKTFRSTIFLMTSEREMTRLTFVKQARISSHACLISCVQSSTQLCSVILFCSMFRXTCSELVYVSVSRVSMFTLLNASATXCRVXFXSVSSLYSLLNSSSFLSRXCQTDASNAISDLTTAEYTCLTFVKIASHVKTSRQLSISILVTXFVSICRRCASHCSFVFSCISRTCTSDFNLITELFICMLVVMLNLFDDKRYVDLKCSAHSKLYLSFIFLKDELLRXTRSLILSRSQFAS
Ga0272433_100247695F104134N/AFLSQTILRTFRSSXSLALSFISLSMIFSXLLMSIVVRTSCVSIAKIQRATCVELAISFAYVXIFFRFAXASELTAXRKMSSLLSLQSDTIRFLXSVDTSAILCKICSIDFFCISFISLLFIILIMTSRFLQSDDESLLRHYFLVAISSLVTFAHDIIFVERRVFLYVCNCLLSSXTDVFSFCTFFAMNAFXFTXCFSFESSQRHXISFNAISFHEXSLLFSFSNVDIFISKSVMLATFSSSSCECFDLMSLFSCNKSTSLAIIFESALLRFVQFIIVQSSSKFTLPCL

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