Scaffold Ga0272433

Basic Information
Taxon OID	3300031450 Open in IMG/M
Scaffold ID	Ga0272433_10024769 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031450 Open in IMG/M

Scaffold ID

Ga0272433_10024769 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5320
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5320

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.87	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.87

Long. (^o)

160.75

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F038484	Metagenome	165	Y
F104134	Metagenome	100	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100247691	F002432	N/A	DXVKXISMMKFSDNFNIFSIISMISFYFNKEFHLRMSFNSDTTDYETTRKRLEARKADDIVIQMKELLSFDRQQLKKIKLIIEVQINKHRRNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKARVFYHLHLSVSMKHLHSMFSSKLLQSYSEDSLSEQHAELFRLIIIDDDDDEHXKIDDILNFRRYRDRIQYKIKXKDLDRDNEXYYVDKGEFNDFEKVLNEFHALYSRKS
Ga0272433_100247693	F038484	N/A	MRSILMCIARMLSAFXKSSRIFIILLLRCNLCAEIVLMSATRSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKRVCRLRLDCIFASSXMKTFRSTIFLMTSEREMTRLTFVKQARISSHACLISCVQSSTQLCSVILFCSMFRXTCSELVYVSVSRVSMFTLLNASATXCRVXFXSVSSLYSLLNSSSFLSRXCQTDASNAISDLTTAEYTCLTFVKIASHVKTSRQLSISILVTXFVSICRRCASHCSFVFSCISRTCTSDFNLITELFICMLVVMLNLFDDKRYVDLKCSAHSKLYLSFIFLKDELLRXTRSLILSRSQFAS
Ga0272433_100247695	F104134	N/A	FLSQTILRTFRSSXSLALSFISLSMIFSXLLMSIVVRTSCVSIAKIQRATCVELAISFAYVXIFFRFAXASELTAXRKMSSLLSLQSDTIRFLXSVDTSAILCKICSIDFFCISFISLLFIILIMTSRFLQSDDESLLRHYFLVAISSLVTFAHDIIFVERRVFLYVCNCLLSSXTDVFSFCTFFAMNAFXFTXCFSFESSQRHXISFNAISFHEXSLLFSFSNVDIFISKSVMLATFSSSSCECFDLMSLFSCNKSTSLAIIFESALLRFVQFIIVQSSSKFTLPCL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272433_10024769

Overview

Ecosystem & Geography

Associated Families

Sequences