Basic Information | |
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Taxon OID | 3300031450 Open in IMG/M |
Scaffold ID | Ga0272433_10022911 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5655 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000756 | Metagenome / Metatranscriptome | 905 | Y |
F010524 | Metagenome / Metatranscriptome | 302 | Y |
F040925 | Metagenome | 161 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272433_100229113 | F040925 | GAGG | VSLNPAQRRVLQEWMRSKAIVMCPCCGQEAWRLVEATYVRALLEKGDEDLTEGGGVVKIPCGNCGYLAFFDAETSGIRGLWAEGREL |
Ga0272433_100229115 | F000756 | AGGAGG | MMDRERHSASDSEGRIPEAWIGQEVMIETTEALSSDLRAAAPVYLEDVNDRGVVILVRRPHDQSQSSRYFFPWSVVGWVRLAEEDVRTEQ |
Ga0272433_100229116 | F010524 | AGGAGG | MTNKDPRRTLAEKVRAVICEEWAGEGASLESAVVYRRLLREGAKVPDYAMSAVLNAFRVGGLIRVAPREPLEEGVRKHGDLSITGVSPNLCTF |
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