NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10018369

Scaffold Ga0272433_10018369


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10018369 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6706
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F034417Metagenome174Y
F058564Metagenome134Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100183691F008598AGGMNGEDNDVQGAAPAHVTLTTDRVTSDTAGPLAEALHAMGVVVERHTFLPARDDDAYPWGVLLLAASGPPLPLARLLASASAPTGVTRALVVALGSGRHATLATLQLKAEGVFVSIRARDLLDITTTLDGLPAHLAHLDTRRGERRLVYSAGAWRIDP
Ga0272433_1001836910F058564AGGAGMTPIGYLIHGHPLCLSCVGGDDGLDADGAAYARDGHGVALDVAPIHPDDPDDGAPCAGCGQSLAAPPEASVVWTCPACGSADLCVFYSERRMCRVGARDDTGDPADAEPWPTYEGDEFVDIDPATFAFACDACNTHGIAPRKGGETHALDRCQAA
Ga0272433_100183698F074201AGGAGGMDTVNITPTPEACHQIARLFRALKADAEALATRAEHALDALDATDDDILALWGRALLRGAARRRRARASGTWTTTPRARVRHMDDGLEALGPYADATDGEGSDDAT
Ga0272433_100183699F034417GGAGGMPWIVVKPRDAWVQQAKDAWAALAPQAPQGAQVRALAAIDHDNFARLIEALTALKPGEVSQELQDLAGLRPVGEVLGMPDRSDADDTDAEIWDW

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