NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10011025

Scaffold Ga0272433_10011025


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10011025 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9756
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064254Metagenome128Y
F074202Metagenome119Y
F102180Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100110252F074202N/AMCKQFHENSRLQNELQNELQNYLHELSIDVFLSSLLKQCIQFSFILKXXFFLKLVISKLRLHVTAELNFKEKVILRCSFFNAKDDDLDSSFDLKTVTNFIKFLXFIISCNDXSFFFNLFLSVKCDVTRSKXADAENQTFESEVVINLAVVDLAVLNNVDKESSLKFENLDYEDGMKRSTSIVSSFFSSDIVN
Ga0272433_100110258F064254N/AMQELYELVSFLLSLSFIXLFNDVTVXNXFSILVENIIQMIAVITLMISRSFLKFVMFSLHCIIFHSIFHLKHVNKMCLINIXSLSHLHIIIATLNTRLSCRNXLKSIFSVHNYVSNALXDFAXSLCSHKCRCVISDVRYXKXAALNFSFQTILHVYLICFCMSVSLIITSMRXCSVSNKDKSYASSIILFIALFSSTSACFATQCSFSMTSQDXMLSCAI
Ga0272433_100110259F102180N/AMNXELNKRLRKLTLIITHHDELKELVVRAKHLADVATVNQECHEKIYKLYNDNQTSLKTVKVMISTKDQTRLQQV

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