Scaffold Ga0272433_10004323

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10004323
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18981
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (39.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008115	Metagenome	338	Y
F070712	Metagenome	122	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000432312	F070712	GAG	MSDIKEKKFLNKVRKQVIFTEKXDLLNLYRKIEVITLVDHSKSCDVILTNVKDINLQAEICFICHKSDHTSRECFNQSRVNVLKDDEFNHLNSESDSDSKN
Ga0272433_1000432317	F008115	N/A	MLXNVYXLHDLPSSIVLNRDFQFILIMXQSLCKXLRITASLLIAYHSEINNQSKQANQDVERELRIYCNYMQNDXAKXLSMIEFSENFNIFSIISMISFYFNKKFHSXISFDSDMTDYETIHKRLEARKADDIIIRMKELFIFDHQQLKKTKQITEAQINKHRRNVIYEVNDXVXLFSRNMKTTKSCKDLKNKQLELYQIIANVEIFYCLRLSESMKXLHLMFSLKLLRLCFDDSLSEQHSESSKFLTIEDDEY
Ga0272433_1000432318	F096307	AGAAG	MLYIIVTQIDASLKENMLKHKKDVDSKNVCDTKKCVCHRNLLIIRNTKKYVCLENNRSXLKDARKEKRC