Scaffold Ga0272433_10004239

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10004239
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19232
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae → Lecanorales → Lecanorineae → Parmeliaceae → Letharia → Letharia lupina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006206	Metagenome	378	Y
F013598	Metagenome	269	Y
F033265	Metagenome	177	Y
F055317	Metagenome	138	Y
F087978	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000423910	F055317	N/A	MKQXDKSEIQQLKAKLQAFTAITVNVIIIAFSIVIYFEQFKYHKILDSLMFINEKNSTXKNXFLDIQKKLAMNVDIFLNELYKLSYINSXLADDVIKVTQVRRNLNCDNFYLTVNEFLKKLAQSFHDSDKKDNYCRKYINLIQESKKFSDFFNQFQQLYIYLKYQKNVLVIDLKNKINSHLXIFXTAQMKSLIKLSNIXNYLIRLNNEHKAAQEIKNKLLKHDDSKIIISKVIIAVQSFALKFDXLKSRSAVLTNVKNADVLVETCFIYHKSDHSFRECLNXFIKVNAVNKNYNHFKLDTESKFKSKN
Ga0272433_1000423915	F013598	N/A	MNFIINLSDSSKYNVILTIICRLSKKKYYISCIIDDENITVKKTAEMLI
Ga0272433_100042393	F087978	N/A	MFSFKILQLYLNDSLSDQHIESLRSITIEDEEHXKINDILNFKCYQDQMQYKVKXKDLDKDDDXYYVDKEKFNNFKKVLNEFHILHSNKSR
Ga0272433_100042394	F033265	N/A	MFSVIEKTMTFQSKKQSELCYEMFIDCMIYSVLLFXIETFNSYSSCERVFVSDYELSLVYSLLIILRSTIKQSESIKMLNVNSKSTVITCRMIELNEYLXLSSVIMSIHSXSSQXFLSTSIKNFILEXVLTQIQLTTKSLMNELKLKKQMILSFEXKNYXTSIINNXKRLSXSLKFRSININETLFMR
Ga0272433_100042399	F006206	N/A	VKIISLCNLDEILSKENYFNKLFLINALLILQNKSFNLRSLIDSDSVVYMIIHINLVNKVCKELKIQSISLTKEKLIKEYDEKIFKKIITHKILLNLIIESHKKLTVSMLIADINHHEVILEKSXMNKNEILLNMQINIIIFSN