Scaffold Ga0272433_10003476

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10003476
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21959
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017941	Metagenome	237	Y
F024448	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100034764	F024448	N/A	MSMSDDSFASESLTTECILSSNEISYSLKSLIDIEAADYSFIDEVIAQIIYDQLQNKSLTLIKAKSIREFNDHYVKKLIIHVIYSNLTVQDYMINTAFMLITXLNQHQMILKKTXMNEINLVIDMQINSLQFSNFNSTSQKSIVLLSSHKTITKQKSLTFTHILKRSFTFVTF
Ga0272433_100034767	F017941	N/A	MKIADLKKNVSKSIYKQVLDMNEINENCTLLREAKIRNEAQYKDIKLKNC