Scaffold Ga0272433_10003439

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10003439
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22088
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Nectriaceae → Ilyonectria → Ilyonectria robusta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F025887	Metagenome	199	Y
F079402	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000343920	F079402	N/A	MQNKLKMNKNHFSIEEMKIAYMKSQVSETMIKHIVLRMRNIIMNSFLEAEEILSIINKMYDDFNQHHMIQRQFLKLY
Ga0272433_1000343921	F025887	N/A	MFDDSFDFKSFIVDVILNSLEKIFKFFALINIEVIDMTFINESLMSKLCEHFDIQSILLLKSKLIXLYDETSDXKC
Ga0272433_1000343923	F002432	N/A	MKFSNNFIIFLITSIIFFYFNKEFHLQMSFNSDTTDYKTTHEQLEAKKADNIIIXMKELLSFDHQQLKKMKLIIKVQINKHKXNITYEVNDXVXLSSRNVKTTRLCKDLKDKQLNLYQITVKVSIFYHLHLLVSMKHLHSMFSSKLLQSYSENSLSEQHSESFRSIIIKDDEY