Scaffold Ga0272433_10002937

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10002937
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24680
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055319	Metagenome	138	Y
F069514	Metagenome	123	Y
F074204	Metagenome	119	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000293721	F074204	N/A	LKLFEFNSTFKDNYMIIFCILRQVQSRVLALALIDSEVFTYVFMNKFFAQQHHLFLHQLIYSCRLQEFDDQVTLIDDITHVVEITMILDKYIKRLFFYIIELSQYFIIMSLS
Ga0272433_1000293722	F055319	N/A	MIEVRVRRLRLVNKMIYIQISERDLAQKLNFFRRQQDFFIYTDDITVINVYDMQSEELLI
Ga0272433_1000293723	F094626	N/A	MFLNERNIITAKSFKKLDDKMLNSFINLDLVDSSYKLKLSESMHVYDVFYSDLLRSVIDNLLSDQKNELSDSIMINDENE
Ga0272433_1000293724	F069514	N/A	MIEFIDNNALFSVIFLIFFFLNKDFHSRMSFEFNVIEYESSCERLQMTKVENISEHMNKTLKFARKSLVKT