Scaffold Ga0272433_10002850

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10002850
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25278
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (13.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F064252	Metagenome	128	Y
F094622	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000285010	F000597	N/A	MKDVLISSTISMLDDFFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAHIVCDQLQIESLTLIKAKSIREFNDYYAKKLIIYVIYLNLTV
Ga0272433_100028506	F094622	N/A	MFMLKQRVYLNDSNSKDDVTAIIMRMNXELNKRLRKSTLVIIYHDELKELVMKVKHLTDIATANQKYHEKIYKVYSDSQTSLKTVKAMISTKDQTCLQXVQIMHESIQS
Ga0272433_100028509	F064252	N/A	MKSQASIKNHTXQDSFTLFNNDHHKFFKFSNSFIFTDKDESTXDSXRIKINNKLQTNINHFNNKNICIVYVISRLEDDAAEHIFAXRXHDALHLYISIDKLFEHLKEIYDELNKNXKCRCKYNTLRQADKSFNVFYFNFMKLFSYLKYNDCTLMNDLQNKINNRLQNTLSVCSKNFTSLTRLRIFLQDVNSKQQVNYQLCSERCTVIIKVTVISDKRATTFLSAVMTSIINYVKLIISSIFELARSLIICYICKILDHLFKNCFQLNKINTSASCAFIFHLHEIIISKNKENEKMSFKNNETKN