NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10002659

Scaffold Ga0272433_10002659


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10002659 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26496
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (41.94%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036994Metagenome168Y
F061401Metagenome131Y
F066295Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000265910F036994AGCAGMXDRMIIEADLLVDLLIEEIDYXLVIEADSLVACEREIDXFTDR
Ga0272433_1000265923F061401N/AVYEFIIIIIHLNNDQRVIQEIKNKVNLIKHVNDLSKIIFHKAVVTQSVNHSKSDHLKLRDAILTNVKEADVLVEICFIYHKSDHSSRKCSDRPTKINAVNNEYDCFEFNFNSNFDLKN
Ga0272433_1000265931F066295N/AMTFNRETDQLNELSNQRDDEIKKLKTRLQTKEITSFDFTYFKRSRSQKISDSFXFTDEKNSTXKNXYDKIQNKLEINVNLFSNEXVKLSYVHFRLFNDTADVAQSRREHNCVNLYKIINDLLKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQQLSFYLKYHEKQLIIDLKDKINSRL
Ga0272433_100026594F036994AGCAGGMXNRMIIEADSLVDLLIEEVDYRLVIEAGSLVAREREVDRFTDR

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