NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10002401

Scaffold Ga0272433_10002401


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10002401 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28605
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (17.39%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008169Metagenome337Y
F009580Metagenome315Y
F011463Metagenome290Y
F020121Metagenome225Y
F038484Metagenome165Y
F048018Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000240113F008169N/ALKTKLQTKEITSSDFIYSEHFKSQKIPDSFXFTDKKNSTWKNXYDKIQNKLEINVNLFSNEXVKLSYVHFRLFNDAVDVAQSKCKHDCVNFYKIIDDFLKELAELFNDSDKKVNFRRKYYKLIQESKKFSKFYTQFQQLSFYLKYHKKQLIIDLKDKINSRLXFIXINQLVQSDFLKKIYFYLIHLNNDQRVIREIKNKVNLIKCINDLLKIIFHKAVVTQSVNHSKSDHLKSCDAILTNVKEADVLVEICFICHKSDHSFKECSDQSTRINAVNNEYNHFEFNFNSNFNLKN
Ga0272433_1000240115F011463N/AMKELLSFNRQQLKKTKLIIEAQINKHKXDVIYEVENXIXLFFKNVKITRSCKDLKDKQLELYQITVKARIFYHLRLSISMKHLHLMFNLKLLQSYSKDSLSEQHAESFRLIIIDENDDEYXKIDDILNFRHYQGXIQYKIKXKDLNKDDEXYYVDKDEFNDFKKVLNEFHVLYLRKSR
Ga0272433_1000240119F009580N/AMIYIQISEHNLTQKLNFSCKQQDFFIYTDDVTVINVHDMQSKELLIXAFFNDFAXMLQFAVVVQLLLVADFLDFKNDQSLILNDDNNKA
Ga0272433_1000240120F001951GAGMIITKLRFIDSLKDEKEKNKDTVEITVTEMMIFELKKLLVNAEIFLTLINEIIMKMK
Ga0272433_1000240121F048018GAGMTLSXVSXMIRKCDLFELSMYFLSXKYRXFSCSLHSTREILLXCCASLQSASIIXPVNLSLISTYFHNVXVKMLAESLSRFRVSXSSXDLTSLTLNFSISRFMRTRICKDVEITENKCNXTESRMMICDXSFMILMSKTSRARFLIISRSKT
Ga0272433_100024014F038484N/AMRLILMCIARVLSAFXRSSRIFIILLLRCNLCAEIALMSATRSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKRVCRLHLDCIFASSXMKTFRSTIFLMTSEREMTRLTFVKRVRISLHACLISCVQSLTRLCSVILFCSMFRXTCSELVYVSASRVSMFTLLNASATXCRVXFXSVSSLRSLLDSSSFLSRXCQTDASNAISDLTTAEYTCLVFVKIAFHVKTSRXLSVSILVTXFAFICQRCASHCSFVFSCISRTRTSDFDLITELSIYMLVVMLNLFDFLVKCVSSYFSGANVASXVQAYFAQTSCALLSVLQISSVNLS
Ga0272433_100024018F020121N/AMFQAQNKLINVEEFIKKMKKLTEHLCNEMLITQIIYKFNVNFFHHSCFKYFIEDKVXLNVCNLSIIYLVVKLNDHNIDFFKIKHVFKNNFLIIKLNLSTFMKIHFIFHVILLNHIVSDFLSSQRQKFQELVIIENDERFXYVNSILNFKHDKHYNSSLLKYYINXENHFFTXKSFHLLNNCE

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