Scaffold Ga0272433_10002335

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10002335
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29238
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (31.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F005901	Metagenome	386	Y
F009377	Metagenome	318	Y
F023763	Metagenome	208	Y
F028367	Metagenome	191	Y
F036504	Metagenome	169	Y
F057012	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000233512	F023763	N/A	MNFQNCLMLILMSRIECISLFKEIFXATCQSIQLIINLVKIINNVIVEFRQKLTSTSLMTTQLLNXHEILKIFVIHDHLDRINRVFKLQSSFLESANNDHEFFIVDLVVTLDXIMLLRKVSDXMKNLVLIRLRKNVFEHIVQSINFYHNLVIXIIVIKNNFKSEDFLKNVECNLTFLKSDKEYIFSDETSKRSSYSTIVIDESFIKVREI
Ga0272433_1000233516	F036504	N/A	LLKHLNEIYYDQNRNRKCHREYNALKQSNKSFSFFYFEFTKIFSFLDYDDXTLMNDLQNKINNHLQNALSVCLIEFSSLDXLKTFLQRVNNKQXVNYQLRDEQXTVKSIAASKERFVSSLTSASVLITSYVQLATFFTLESEXSRMSIICFNCKVSSHISKNCSQLKTSTSCAFIFCLNEIIMLKEEKKLFTEKLKNETKN
Ga0272433_1000233522	F028367	GAG	LCKLDEILLRENYFEKSFLINAHLISQNXSFSLCSLIDSDSIVYTIIHSNLVDKVCKKLKIQSISLTKEKLIRNYDEKIFKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNNVIVFSNQLNTSISIFSIFLNSKHSS
Ga0272433_1000233526	F005901	N/A	LHSYISIYKLLEHLEEIYKNQNKNXKYHHEYNILKQADKFFNIFYFNFMKLFSYLNYNDCILMNDLQNKINNCLQNALLICSKNFTSLTRLRIFLQDVNNKQXVNYQLRSERCTVIIKVTVVSDKCAATSLSVTTSVINYVKSIISFISESVRSFIICYTCKISSHLSKNCSQNKINTSAFCAFTFRLHEIIISKNKENEKMSFENSKAKN
Ga0272433_1000233527	F000597	N/A	MSDDSFASESLTIECVLSSNKISYSLKSLIDIEAADYSFINEVITQIVYDQLQIQLLTLIKAKSIQEFNNHYVKKLIIHVIYSNLTV
Ga0272433_1000233528	F009377	N/A	MIRSTESESVSIAHYKLQNARRESLLSQNRTASKEEDMNASLNTEEENMNALLFNHEMIKISINEELNAXIIDKRTDDIIIFIKYMTHQHDIKIETYNDMIQMLKDVNKINIKLKTIQTTLNIIRTRLQKKMKDKNVIIHHLKSALSQQSTLILKDXFLKLIKLSDSSLFEDLKQNVNNXLSXMQNKLKMNKNHFSIEELKIAYVKSXVDETMIKHIAS
Ga0272433_1000233530	F057012	AGAAG	MXLSXISSDTRNCNEFEKQSVLVKVMIENDMLIFCFISMLDDSFNFKSFIVNIILNSLEKIFRFLVLINIKVTDMTFINDSLISELCERFDIQSISLFKLKLIYSYDEILDRRSITYALYISITIQEHKNEMMFLLITHLDQHKIIIDNLXLKRNQILINSANNQLISLSNIQILKLIVLKASSQSAFHXLESSEICEMKRKNLKSMSMIILKRTTNSKSVNRFIELVLIQKQST
Ga0272433_100023359	F001951	N/A	MKLRFINLLRDKRERDKDIVETTVTEVMIFELKKLLVDAERLLTLMNKTMMKMKQD