Scaffold Ga0272433_10002205

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10002205
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30665
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F024448	Metagenome	205	Y
F039410	Metagenome	163	Y
F061400	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100022051	F039410	N/A	XFFFDXFSRVLNEAASMLRIENDSFLVVVETGRLSIIEASVXMIEESEVDRDQLECFELREIEKTEIEVFSXFEKTMTSFCIFNNISFLFIQSLLNMTSXXLISAISIDTVNFLXLSMMRLNEILXVMIFLDIFPS
Ga0272433_1000220516	F061400	N/A	MTSESVKQIMLLKYYNCIMNLNSEKTIIKAXDIYHREKDEDNVINESDDSFKTDLQNVLCSINV
Ga0272433_100022052	F004755	N/A	LKELAELFNDSNKKVNFHREYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLRFVXIDQLVQLDFLKEIHFYLIHLNNDQRVIXEIKNKVNLIKCIDDLSKIIFHKAVVTQSVDHSKSDHLKSRDAVLTSVKKADVLVETCFICHKSGQSFRECLDRLTRINAVNNEYDRFDFDLNSDSKN
Ga0272433_100022054	F024448	N/A	MKDMLISSMMSMSNDSFASESLTTKYVLSSNEISYLLKSLIDIEAADYLFIDEVITQIVCDQLQIKSLTLIKVKSIXEFNNHYAKKLIIHVIYLNLTVQDHTIDTAFMLITRLNQHQMILEKTXMNKINLVIDMQINSLXFSNFNSTSQKSIVLFSSHKIITKQKSLTSTHILRRSFTFVTLQLSQKSLSFN