NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10002056

Scaffold Ga0272433_10002056


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10002056 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32481
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (15.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008735Metagenome328Y
F011463Metagenome290Y
F061400Metagenome131Y
F066295Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000205611F011463N/AMKELLSFNHQQLKKTKLIIEAQINKHRRDVIYKIDDXVXLFFRNVKIMRSCKDLKDKQLKSYQITVKAKVFYHLHLSVSMKHLHSMFSLKLLQSYSEDSLSEQHAKLLRLIIIDDDNDEHXKIDDILNFRRYQDXIQYKIKXKDLDKDDEXYYVNKDEFNNFKKVLNEFHMLYSRKSR
Ga0272433_1000205615F066295N/ALKTKLQTKEITSSDFIYSERFRSQKTSDSFXFTDEKNSTWKNXYDKIQNKLEINVNLFSNERVKLNYVHFRLFDDAADVTQSRCEHDCVNFYKIVDNLLKELAELFNDSDKKVNFHRKYYNLIQESKKFSEFYNQFQQLSFYLKYHEKQLIINLKDKINSRLXFIXINQLVQSDSFKEIHFYLIHLNNDQQVI
Ga0272433_1000205623F001951N/AMMIIIKLKFINSSRNKREKDEDTVKTTVTKMMIFKLKKLLVDAKMFLTLMNKMMMKTKQD
Ga0272433_1000205625F008735N/AMKEVMIIIHVHALYQTLLSCIQSIFVSFILKYVEKLLEFKSDDDSNRICREMNDEKRLIVQDLCNNLNYHCKKLRIQFYINXKIENDEXKXDDNIMLLNLILKLLHCTKNFNXIFNHTLSKLFNSMLIID
Ga0272433_100020563F061400N/AMTSESIEQIMLLKYYNCIMNLNSEKTIIEVXNIYCRKEDEDNIIDEAADSFKANLQNVLCFIIV
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