NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10002039

Scaffold Ga0272433_10002039


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10002039 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32657
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (18.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F025887Metagenome199Y
F048017Metagenome148Y
F083460Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000203918F048017N/AMKNKQLSQQQVNYLNILLKFNFQIIFKSGKMNTKVDALIRMFLVNIFESAQRLEDHFQTILIFNKVNVLFIKSKANLYQXVXMINKTDELCSKYRQAMNENRLKFHITKLKNCKIIDDVLFRKDLLXISENMHTKLLQKVHDQSSISHLNNKXIIDLVQRFYYXSDHQATIRXYI
Ga0272433_1000203922F008169N/AMFSHSFIEECFKEFQNRFSQISDADSSKSRTKSSSAASFIHEDDKSFIETIIFLVFYKIXKTXSLVLDKETDQLYELNKXQENEIKELKAKLQAKEITSSDFIYSERSRSQKISDSSLFTDEKNSIXNIXYNKIQNKLEINVDLFLNERVKLSYIHSRLFNNAAEITQARREHDCINLYKTINDLLKELAQLFNDSNKKINFRRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIIDLKDKINSCLQFIXVDQLVQSDFLKEIHFYLIHLNNDQRVIQEIKNKLKCINDLSKTIFHKVTVIT
Ga0272433_1000203925F083460GAGMRMRMKSLNSQAYSDALLELNASSIEYAMRRRLHELSNYCLNHEEFQGNSENDDENEAAEAV
Ga0272433_1000203932F025887N/AMSDDLFDFKSFTVDIILNSLEKIFRFLTLINTKVIDMTFINESLMSELCERFDIQLILLSKSKLI

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