Scaffold Ga0272433_10002015

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10002015
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32954
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (25.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F048018	Metagenome	148	Y
F074204	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000201510	F009580	N/A	MIYIQIFECNLAQKLNFSCRQQDFFIYIDDIIIINVHDMQSEELLIXVFFSNFAXMLQLAVVAQLSLVADFLDLRNDQSLILNDDNNET
Ga0272433_1000201511	F074204	N/A	MIVFCILHQAQSKVFTFALIDSEVLTYVFMNKFFAQKHHFFLHQLTHSCKLQEFNDQVTLINDITYVIKITMILDEHIKKLFFYVIELSQYLIIMNLS
Ga0272433_1000201517	F048018	N/A	MTLSXVSXMIXRRNLSELSTYFLSXKYKXFSCSLHSIREILLXCYASLXSTSIIXAANLLLISTYFHNVXVKVLAESSSRFRVSXFSXDSMFSTSNSSNSKFMKVKICKDAEITENKCNXIEFKMIIYDXNFITLMSKMSKMRFSTILRFKT
Ga0272433_100020159	F001951	GAG	MTITKLKFIDSSKDEKERNKNTVETTITKIMILKLKELLIDAKMFLTLMNKTITKMKQD