Scaffold Ga0272433_10002009

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10002009
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33016
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (27.27%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F010214	Metagenome	306	Y
F040408	Metagenome	161	Y
F075493	Metagenome	118	Y
F075494	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000200913	F010214	GAG	MKVSVLFDYDTLVLLCSSLMIFYTTMFXFNSRFKDKRCFLYIHDIHDYNIHKAVFSYSIIVIYXAEKYVMKERCTXXEDRMXLYXVTLFFSXFDLCHVNIEXIVSIDMQSQSFNVXLXSMKENAFXSFSXALDFSCE
Ga0272433_100020092	F040408	N/A	MYDYKSIFDIHIKNDAMKEEMSAVKERVEMLQDVQNTLMQ
Ga0272433_1000200920	F075493	N/A	MXSVQAMHKYMLRHLITSFAVTLQAIHVXNVSKVQINVQIYAFNSDVHCKNAFCFLKIITHLYHLIAQMQSLCXNYVNVCDAFSVLFSSLISLIFVILHYCDAITCXNHCEEESVLFAFQLYLCIFLNENIQKYYFLDDE
Ga0272433_1000200928	F000597	N/A	MKNVLISSTTSMSDDSFASESLTIEYILSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIESLTLIKTKSIQEFDDHYAKKLITHVIYSNLTV
Ga0272433_1000200929	F005901	AGAAG	MNDKLIVNVDQFNDEIICIVYMMSRLEDDAAKYIFAXHHFDSLNSFTSIYELFNHLKEIYDELNKNQKSQREYNALRQADKSFNVFYFNFIKLFSYLNYDDCTLMNNLQNKINNRLQNALSICSKNFTSLFHLKKFLQDVNNKQRVNYQLRSERCIVIIKVTVISDKHATFLSMMTLIINYVKSTIFSIFKSARSSIICYICKTLNYLFKNCSKLNKINIFASXAFILCLHEIIILKNKENEKMSSFKNSETKK
Ga0272433_100020094	F075494	N/A	MINDVEKTFVHSVSKRKYSAKHVESRSQDEIYCTQVINEVKKMFVHSISENTSTCSAMHVRSMLLRVMFLTMRETHLDEVHFLKDKIFQFKSTTSRSTDVKTXIHRDCNVAEKQLNSVAKTIDCKQLISRAIVRVLTIHEMIYNFSSKFIIELIKIL
Ga0272433_100020099	F010214	GAG	MKVSVLFDYDASSLLCSSLMIFYTTMFRFNSRFKDERCFLCIRNAHDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVTLFFSXFDLCHVDVEXTVSIDMRSQSFDVXLXSMKENAFXSFS