Scaffold Ga0272433_10001967

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001967
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33450
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (33.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F036994	Metagenome	168	Y
F037509	Metagenome	167	Y
F044227	Metagenome	154	Y
F048685	Metagenome	147	Y
F070712	Metagenome	122	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100019671	F036994	AGCAG	MXNRMIIKADSLVDLLIEEINYRLVIEADSLVAREREIDXFTDR
Ga0272433_1000196711	F044227	N/A	MXLQLRSSDNETDTHVLLELIASAIKNAMKRXLLELSNNHHYYEKSQSSCKNDDENEASETI
Ga0272433_1000196733	F070712	GAG	MSDIKEKKFLNKVRKQVIFAEKRDSLNLYRKIEITTFVDHSKSYDAILTSVKNINLQAEICFICHKSDHTSRKCSDQSRVNVLKDNEFNHLNSESDSDSKN
Ga0272433_1000196736	F037509	N/A	MILISLFIQVHSTDNKMNIKKFVYLMINDIERQNNIKRSIESTKTYDHMIARESIAQSVASVQID
Ga0272433_1000196737	F096307	N/A	MLYIVVTQIDASLKGDVLKHKEDVGLKDVCDTKECVCHRNLLITRNTKKYVCLEGNRSWLEGAREGKRCWAISVPNLGQI
Ga0272433_100019674	F048685	GAG	MRXVQKLADFNFKIMYQLSKQNIKINALIHXINVMLKDLDDERIYYQXIIILTLNXMKIADLKKNISESIYKQILEINKIDENCMLLREVIARDET
Ga0272433_100019679	F000597	N/A	VTFIKDVMKDVLISLMMSMSNDSFASESLTTECILSSNEINYSLKSLINIKAADYSFIDEVIVQIVYDQLQIKSLTLIKAKSIREFNDYYAKNLIIYIIYSNLTVQDHIIDITSMLITQL