Scaffold Ga0272433_10001906

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001906
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34466
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (14.63%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008668	Metagenome	329	Y
F025887	Metagenome	199	Y
F061402	Metagenome	131	Y
F065269	Metagenome	127	Y
F087978	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000190615	F025887	N/A	MFDDSFNFKSFTIDIILSSLEKIFRFLILIDTEVTDMTFINEFLMSELCECFDI
Ga0272433_1000190617	F065269	N/A	MTRSSESASIAYYELQNVRRKSLLSQNQTASEEEDTNALLNIEEKNMNVLLFDHEMIKISISTKLNA
Ga0272433_1000190634	F061402	N/A	MQDDXFIXLFMTEFINNNAISSSIEQSMFFLNKDFHSCMSFDLNLTEYEIIQARIEVSKAKNIFKHMK
Ga0272433_100019067	F087978	N/A	MFSSKLLRLYSEDLLSEQHAESLRLIIINNDDDEHXKINDILNFRRYXDXIQYKIKXKDLDKDDEXYYVDKDEFNDFKKVLNEFHMLYSRKSR
Ga0272433_100019068	F008668	N/A	MSFNSDTTDYEIIHERLKARKANDIVIQMKELLSFDHQQLKKTKLIIEAQINKHRRDVIYEIDDXI