Scaffold Ga0272433_10001871

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001871
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34861
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048018	Metagenome	148	Y
F096306	Metagenome	104	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100018713	F102180	N/A	MMKMNXELNKRLKESTLVIIHHDELKELIARMKHLADVVTVNQECHEKIYKIYSNNQTFLKTIKAMISTKNQTRLQXV
Ga0272433_1000187130	F048018	N/A	MTLSXMSXMIXRRSLFELSTYFLSXKYRXFSCSLYSTRKILLXCCASLQSASIIXTANLSLISTCFHNVXMRMSAESLSRFKMSXSSXDLMFSTLNSSISRFIRARICKSAEITENKCNXTESRAMICDXSFMTLMSKTSKTRFLIILKFKTXVFRIVXC
Ga0272433_1000187135	F096306	N/A	MFAMYDNHAVDSLIIDDDSNEERSCKNNSEIQASMILLDIAILIATNVKIVFVESNDK