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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031450 Open in IMG/M |
| Scaffold ID | Ga0272433_10001860 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35018 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (20.41%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025887 | Metagenome | 199 | Y |
| F033265 | Metagenome | 177 | Y |
| F036994 | Metagenome | 168 | Y |
| F065268 | Metagenome | 127 | Y |
| F087978 | Metagenome | 109 | Y |
| F098340 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272433_1000186010 | F036994 | AGCAG | MXNRVIIEADSLVDLLIEEIDYRLVIEAGSLVAREREVDRFTNR |
| Ga0272433_1000186027 | F025887 | N/A | MSDDSFDFKSFTVNIILNSLEKIFKFFTLIDTEVIDMTFINESLISELCEHFDI |
| Ga0272433_1000186030 | F065268 | N/A | MTRSSESASIARYELQNVRRKSLLSQNXTASEEEDTNASSNTEEENTNVLLFDHEMIKISISTELSAXISAYEADNIIVFIKYIC |
| Ga0272433_1000186046 | F098340 | N/A | MIEVAVYQTLVKNKKIKIFFLIISEINKALNSVEDFAKLNEIIFVMSLDELKKKLSIVYHNFLNVFDRKKITQLSLHXSYDHKIELKDESQSSXS |
| Ga0272433_100018605 | F033265 | N/A | MFSVIKKMMTSQLKKRFESCYEMSINCMIYSVLLFRTETLNSYQLCERVFASDXESQLVYSQSIIQRLMIRXNESIKMLNANLEFTAITYRTTESNEYLXXNSATISISSQSSQXFLSTSIKIFTLEXVSIQIXLTTKSLVNDXKLEKQMILSFEXKSYXASIVNNXKRRSXLSKHKSININETLFMK |
| Ga0272433_100018606 | F087978 | N/A | MFSLKLLRSYSEDSLSEQYAELFKLIIIDDDDDEHXEINDILNFRRYQVXIQYKIKXKDLDRDDDXYYVDKDEFNDFKKVLNEFQMLYSRKSR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |