Scaffold Ga0272433_10001814

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001814
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35657
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (4.35%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F028368	Metagenome	191	Y
F036504	Metagenome	169	Y
F044226	Metagenome	154	Y
F074203	Metagenome	119	Y
F081945	Metagenome	113	Y
F087978	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_100018141	F074203	N/A	MLKHSSIKECFKEFQSRFSQISKTDSLKLFSAESFINEDDKSFTETVILSVSIKNXKTQCMILDRETDXLNELSKQXDDEIKELKTKLQTKEITSSDFIYSERSRSQKIPDSFXFTDKKNSTXKNXYDKIQNKLKINFNLFSNEQVKLSYVHFRLFNDAADVTQSRCKRDCVNFYKIVDDLLKELTEL
Ga0272433_1000181423	F081945	N/A	MFNYSFTEKCFEEFQNHFSQISDADSLKLRTKSSSAASFIHEDNELFAEMIILFMFYEIXKT
Ga0272433_1000181430	F044226	N/A	MKFSNNFNIFSITSMIFFYFNKEFHSXISFDSNMTDYKTTHERLEARKADDIVI
Ga0272433_1000181431	F087978	N/A	MFSLKLLQSYSEDSLSEKHSELLRLITIKDDEHXEINDILNFKRYXGXIQYKVKXTDLNKDDEXYYVDKEKFDDSEKVLNEFHKLYSVEIMFRI
Ga0272433_1000181434	F028368	N/A	LLQFQFEFXFKKLIISSKVIEEIKIISLCKLNEILLKENYFEKSFLIDAHFILQNQFFSLHSLINSDSVTHTLIHVNLVNRVCKKLEIQSIFLTKEKLIKDYNEKIFKKIIIYKILFNLIIKSHKKLTVLMLIADIDHHEVILSKLXMNKNEILLNMQNDVIVFLNQLNTSISIFSISLNSKHSSXLXSTSSSSITQTKIFIMLKRLISITAQKESFSIXSINATLFKTLLNHLKKNQTEVFALFMININRKITYNTQCNLNALNVSLINEMTQNLKDIKAKLLSIYHEFLNVFDXTQLNKLLFHRFYDHKIKLINDLMLSCCRVY
Ga0272433_1000181436	F002432	N/A	MKFSDNFNIFSIISMISFYFNKDFHSXMSFNSDTTDYKIIHEXLKTRKADDIIIQMKKLLSFNHQQLKKTKLIIEAQINKHRXDVIYKINDXVXLFFRNVKITRSCKDLKNKQLELYQIIVKAKVFYHLHLLVSMKHLHLMFSLKLLQLYSEDLLSEQHAESLRLIIINDDDNEHXEINDILNFRCYQDXIQYKIKXKDLDKDDKXYYVNKDKFNDFKKVLNEFHMLYSRKSR
Ga0272433_100018148	F036504	N/A	VNHYSTEKIHIVYVIFRLEDNADQQIYAKHHVDAFSFYQSLSKLLKHLKEIYEDQNLIXKYHCKYIVLKQLNKLFSSFYSEFTRIFSFLNYDDVILMNNIQNKINNHLQNTLSVCLIKFSSLNKLKIFLQDVNNKQQVNYQLRDEQXTVKSIAALKKCFVSSSTSASILTTNYVXLVTFFTLESEQSRMSIICFNCKVSNHLSKNCFQLKTSTLTSCAFISCLNEIIMSKEEKKLFTEKLKNKTKN