NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001719

Scaffold Ga0272433_10001719


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001719 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37201
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (21.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F024448Metagenome205Y
F039410Metagenome163Y
F048685Metagenome147Y
F074203Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000171910F074203N/AMLSHLLTEECFEEFRNRFSQISDADSLKSQTKSSSATSFIHEDDESFIETIIFLMFYEIXKAXSLALDEETDRLYKLDKQQEDEIKELKTKLQAKENTSSDFTYSERSRSQKISNSSLFTDEKNSTXKNXYEKFQNKLEINVDLFSNKXVKLSYVHFRLFNDAAEIIQSRREHDYVNLYKIIDDLLKELAELFNDSNKKVNFRKEYYNLIQESKKFSKFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLQFIXIDQLVQSDSLKEIHFYLIHLNNNQRVI
Ga0272433_1000171919F008668N/AMSFNSNSTNYETTYEHLEARKADDIIIXMKEFLIFDHQKLKKTKQIIEAQINKHKXDVIYEVNDXV
Ga0272433_1000171926F024448N/AMKNVLISSMMSMSDNSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITXLNQHQMILEKTXMNKIDLVIDMQIDFLRFSNFNPTSQKSIVLFSSHKTITKQKSLTSTHILRRLFTFVTF
Ga0272433_1000171936F048685N/AMYQSDKQNIKINALTHQADFILRDFDDERVCYQQITILTLNXMKIADLKKNVNESIYKQVLDVNEIDENCTLLREAKIRDEAQCKDIKLKNCQVQNEILYKDNQL
Ga0272433_100017199F039410N/AMFKAFKSHXVLYVIFLLMFIMNKAKTLILFFFEXFNNILNEAVFMLXIENDFFXTVIEMSRLSIIEILVXVIEENKVDRSQLECFELSKIEKIEIEVFNXFEKTMTSFRIFSNISFLFIQSLFNMTSXXSISTINIDTVNFLXLSMMRLSSILXVMIFLNIFSS

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