Basic Information | |
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Taxon OID | 3300031450 Open in IMG/M |
Scaffold ID | Ga0272433_10001719 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37201 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (21.05%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008668 | Metagenome | 329 | Y |
F024448 | Metagenome | 205 | Y |
F039410 | Metagenome | 163 | Y |
F048685 | Metagenome | 147 | Y |
F074203 | Metagenome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272433_1000171910 | F074203 | N/A | MLSHLLTEECFEEFRNRFSQISDADSLKSQTKSSSATSFIHEDDESFIETIIFLMFYEIXKAXSLALDEETDRLYKLDKQQEDEIKELKTKLQAKENTSSDFTYSERSRSQKISNSSLFTDEKNSTXKNXYEKFQNKLEINVDLFSNKXVKLSYVHFRLFNDAAEIIQSRREHDYVNLYKIIDDLLKELAELFNDSNKKVNFRKEYYNLIQESKKFSKFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLQFIXIDQLVQSDSLKEIHFYLIHLNNNQRVI |
Ga0272433_1000171919 | F008668 | N/A | MSFNSNSTNYETTYEHLEARKADDIIIXMKEFLIFDHQKLKKTKQIIEAQINKHKXDVIYEVNDXV |
Ga0272433_1000171926 | F024448 | N/A | MKNVLISSMMSMSDNSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITXLNQHQMILEKTXMNKIDLVIDMQIDFLRFSNFNPTSQKSIVLFSSHKTITKQKSLTSTHILRRLFTFVTF |
Ga0272433_1000171936 | F048685 | N/A | MYQSDKQNIKINALTHQADFILRDFDDERVCYQQITILTLNXMKIADLKKNVNESIYKQVLDVNEIDENCTLLREAKIRDEAQCKDIKLKNCQVQNEILYKDNQL |
Ga0272433_100017199 | F039410 | N/A | MFKAFKSHXVLYVIFLLMFIMNKAKTLILFFFEXFNNILNEAVFMLXIENDFFXTVIEMSRLSIIEILVXVIEENKVDRSQLECFELSKIEKIEIEVFNXFEKTMTSFRIFSNISFLFIQSLFNMTSXXSISTINIDTVNFLXLSMMRLSSILXVMIFLNIFSS |
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