Scaffold Ga0272433_10001719

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001719
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37201
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (21.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008668	Metagenome	329	Y
F024448	Metagenome	205	Y
F039410	Metagenome	163	Y
F048685	Metagenome	147	Y
F074203	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000171910	F074203	N/A	MLSHLLTEECFEEFRNRFSQISDADSLKSQTKSSSATSFIHEDDESFIETIIFLMFYEIXKAXSLALDEETDRLYKLDKQQEDEIKELKTKLQAKENTSSDFTYSERSRSQKISNSSLFTDEKNSTXKNXYEKFQNKLEINVDLFSNKXVKLSYVHFRLFNDAAEIIQSRREHDYVNLYKIIDDLLKELAELFNDSNKKVNFRKEYYNLIQESKKFSKFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLQFIXIDQLVQSDSLKEIHFYLIHLNNNQRVI
Ga0272433_1000171919	F008668	N/A	MSFNSNSTNYETTYEHLEARKADDIIIXMKEFLIFDHQKLKKTKQIIEAQINKHKXDVIYEVNDXV
Ga0272433_1000171926	F024448	N/A	MKNVLISSMMSMSDNSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITXLNQHQMILEKTXMNKIDLVIDMQIDFLRFSNFNPTSQKSIVLFSSHKTITKQKSLTSTHILRRLFTFVTF
Ga0272433_1000171936	F048685	N/A	MYQSDKQNIKINALTHQADFILRDFDDERVCYQQITILTLNXMKIADLKKNVNESIYKQVLDVNEIDENCTLLREAKIRDEAQCKDIKLKNCQVQNEILYKDNQL
Ga0272433_100017199	F039410	N/A	MFKAFKSHXVLYVIFLLMFIMNKAKTLILFFFEXFNNILNEAVFMLXIENDFFXTVIEMSRLSIIEILVXVIEENKVDRSQLECFELSKIEKIEIEVFNXFEKTMTSFRIFSNISFLFIQSLFNMTSXXSISTINIDTVNFLXLSMMRLSSILXVMIFLNIFSS