Basic Information | |
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Taxon OID | 3300031450 Open in IMG/M |
Scaffold ID | Ga0272433_10001657 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38279 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (22.92%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011463 | Metagenome | 290 | Y |
F036504 | Metagenome | 169 | Y |
F057011 | Metagenome | 136 | Y |
F061402 | Metagenome | 131 | Y |
F070712 | Metagenome | 122 | Y |
F096307 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272433_1000165712 | F070712 | GAG | MNDIKEKKFLIKVRKQVIFAKKRDSLNLYRKIEVTTLVNHSKSCNVILTSIKDIDLQVEICFTCHKSNHTFRKCSDXSRVNALEDDEFNQFILNFEFNSDSKN |
Ga0272433_1000165713 | F057011 | GAG | LCSQIKVLLKENYFKKSFLINASFISQSNSFSLRFLIDGDFIIYMLIHDKLVNKVCQKLEIQFMSLAKEKLIRDYDEKLARKTITHKILLNLTIESHKKLTMSMLIADIEHHEAILSKTXMNKNEILLNMRHDTIVFSDQLNISISIFSISSNTKHSSXSRSTLISSAAHSKIFKMLKHSVSFFQKESFLIQNIDVTSF |
Ga0272433_1000165718 | F036504 | N/A | VNHYFTEKICIVYVIFRLEDDADQQIYAKHRVDAFLFYQSLSKLLKHLKEIYEDQNLIRKCYYKYVALKQLNKLFSFFYSEFTRIFSFLNYDDITLMNNIQNKINNCLQNVLSVCLIKFSSLDKLKIFLQNVNNKQQVNYQLRDEQQTVKSITASKKRFVSSSTSTSVLITSYVQLVTFFILKSEXSRMSIICFNCKVSSHLSKNCSQLKTSTSTSRAFISCLNEIIMSKEEKKLVTEKLKNEAKN |
Ga0272433_1000165740 | F011463 | N/A | MKELFIFDCQQLKKMKQIIKAQINKHKQDVIYEVNNXVXLFFRNIKTTRSCKDLKDKQLELYQITIKVEIFYHLHLLISMKHLHSMFSLKLLQSYSEDFLSEQHSESLKSIIIKDNEYXKINNILNFRHYQDQIQYKVKXTNLDRNNEXYYVNKEKFNDSEKVLNEFHRLYSNKSR |
Ga0272433_1000165741 | F096307 | N/A | MLYIVVTQINASLKEDVLKHKKNVDLKDVYDTKKCVYHRNLLIIRNTKKCVYLEDNRSXLEDAESHLSQIXVRFKSDLD |
Ga0272433_1000165744 | F061402 | N/A | MQDDXFTXLFMVEFINNNAISSLIEQLTFFLNKNFHSHMSFDLNSIEYEITQARIEADKAENIFKHMK |
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