Scaffold Ga0272433_10001657

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001657
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38279
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (22.92%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011463	Metagenome	290	Y
F036504	Metagenome	169	Y
F057011	Metagenome	136	Y
F061402	Metagenome	131	Y
F070712	Metagenome	122	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000165712	F070712	GAG	MNDIKEKKFLIKVRKQVIFAKKRDSLNLYRKIEVTTLVNHSKSCNVILTSIKDIDLQVEICFTCHKSNHTFRKCSDXSRVNALEDDEFNQFILNFEFNSDSKN
Ga0272433_1000165713	F057011	GAG	LCSQIKVLLKENYFKKSFLINASFISQSNSFSLRFLIDGDFIIYMLIHDKLVNKVCQKLEIQFMSLAKEKLIRDYDEKLARKTITHKILLNLTIESHKKLTMSMLIADIEHHEAILSKTXMNKNEILLNMRHDTIVFSDQLNISISIFSISSNTKHSSXSRSTLISSAAHSKIFKMLKHSVSFFQKESFLIQNIDVTSF
Ga0272433_1000165718	F036504	N/A	VNHYFTEKICIVYVIFRLEDDADQQIYAKHRVDAFLFYQSLSKLLKHLKEIYEDQNLIRKCYYKYVALKQLNKLFSFFYSEFTRIFSFLNYDDITLMNNIQNKINNCLQNVLSVCLIKFSSLDKLKIFLQNVNNKQQVNYQLRDEQQTVKSITASKKRFVSSSTSTSVLITSYVQLVTFFILKSEXSRMSIICFNCKVSSHLSKNCSQLKTSTSTSRAFISCLNEIIMSKEEKKLVTEKLKNEAKN
Ga0272433_1000165740	F011463	N/A	MKELFIFDCQQLKKMKQIIKAQINKHKQDVIYEVNNXVXLFFRNIKTTRSCKDLKDKQLELYQITIKVEIFYHLHLLISMKHLHSMFSLKLLQSYSEDFLSEQHSESLKSIIIKDNEYXKINNILNFRHYQDQIQYKVKXTNLDRNNEXYYVNKEKFNDSEKVLNEFHRLYSNKSR
Ga0272433_1000165741	F096307	N/A	MLYIVVTQINASLKEDVLKHKKNVDLKDVYDTKKCVYHRNLLIIRNTKKCVYLEDNRSXLEDAESHLSQIXVRFKSDLD
Ga0272433_1000165744	F061402	N/A	MQDDXFTXLFMVEFINNNAISSLIEQLTFFLNKNFHSHMSFDLNSIEYEITQARIEADKAENIFKHMK