NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001657

Scaffold Ga0272433_10001657


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001657 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38279
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (22.92%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011463Metagenome290Y
F036504Metagenome169Y
F057011Metagenome136Y
F061402Metagenome131Y
F070712Metagenome122Y
F096307Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000165712F070712GAGMNDIKEKKFLIKVRKQVIFAKKRDSLNLYRKIEVTTLVNHSKSCNVILTSIKDIDLQVEICFTCHKSNHTFRKCSDXSRVNALEDDEFNQFILNFEFNSDSKN
Ga0272433_1000165713F057011GAGLCSQIKVLLKENYFKKSFLINASFISQSNSFSLRFLIDGDFIIYMLIHDKLVNKVCQKLEIQFMSLAKEKLIRDYDEKLARKTITHKILLNLTIESHKKLTMSMLIADIEHHEAILSKTXMNKNEILLNMRHDTIVFSDQLNISISIFSISSNTKHSSXSRSTLISSAAHSKIFKMLKHSVSFFQKESFLIQNIDVTSF
Ga0272433_1000165718F036504N/AVNHYFTEKICIVYVIFRLEDDADQQIYAKHRVDAFLFYQSLSKLLKHLKEIYEDQNLIRKCYYKYVALKQLNKLFSFFYSEFTRIFSFLNYDDITLMNNIQNKINNCLQNVLSVCLIKFSSLDKLKIFLQNVNNKQQVNYQLRDEQQTVKSITASKKRFVSSSTSTSVLITSYVQLVTFFILKSEXSRMSIICFNCKVSSHLSKNCSQLKTSTSTSRAFISCLNEIIMSKEEKKLVTEKLKNEAKN
Ga0272433_1000165740F011463N/AMKELFIFDCQQLKKMKQIIKAQINKHKQDVIYEVNNXVXLFFRNIKTTRSCKDLKDKQLELYQITIKVEIFYHLHLLISMKHLHSMFSLKLLQSYSEDFLSEQHSESLKSIIIKDNEYXKINNILNFRHYQDQIQYKVKXTNLDRNNEXYYVNKEKFNDSEKVLNEFHRLYSNKSR
Ga0272433_1000165741F096307N/AMLYIVVTQINASLKEDVLKHKKNVDLKDVYDTKKCVYHRNLLIIRNTKKCVYLEDNRSXLEDAESHLSQIXVRFKSDLD
Ga0272433_1000165744F061402N/AMQDDXFTXLFMVEFINNNAISSLIEQLTFFLNKNFHSHMSFDLNSIEYEITQARIEADKAENIFKHMK

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