NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001578

Scaffold Ga0272433_10001578


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001578 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39687
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020121Metagenome225Y
F038484Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000157818F038484N/AMRLILMCIARMLSAFXRLSRIFIVLLLRCNLYAEIALTSATRSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKRMCRLHLNCIFASSXMKTFRSTIFLMTSEREMTRLTLVKRARISLHACLISCVRSLTQLCSVILFCNMFRXTCSELMYVSVSRVLMFTLLNASATXCKVXFXSVSSLHSLLNSSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIALHVKTSRXLSVSILVTXFVSICXRCASHCSFVFSCIFRIHTSDFNLITELSICILVIMLNLFDFLVKCVSSYFSDANVASXVQAHFAQTLCALLSVLQISSVNLS
Ga0272433_1000157820F020121GAGMLIAQIIYEFNINLSYCSCSKHFVEDEVXLNACNLSIIHLTVKLNNHNIDFFKIKCVFKNNSLIIKLNLSAFMKIHSIFYIILLNHITSDFLSSQHQKLQEFVIIKNDKKFXYVNSILNFKHDRCYNSSLLKYYINXKNHFFTXESFHLLNNCEQMLNEYHLVNSVVEESHVLSCVISQC
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