Basic Information | |
---|---|
Taxon OID | 3300031450 Open in IMG/M |
Scaffold ID | Ga0272433_10001570 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 39843 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (13.89%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020121 | Metagenome | 225 | Y |
F028368 | Metagenome | 191 | Y |
F076668 | Metagenome | 117 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0272433_1000157012 | F076668 | N/A | MTCLLLTSXFLAHASACKKLMNSTDSYAIKETISAFASTKKIMHISNALLINMLMLCNRKLKDVTNQKXLHCARFENIKSQLKISFLKXFLNDLXERLCTTVFIQICYHMIIAFSALSXVLFKKSLKTLCAFLXKVNALLFCIITLVVEFSLIFCFMQTLTXQ |
Ga0272433_1000157018 | F020121 | GAG | MKKLTEHLHDEMLIAQIIYKFNVNLSRRSCFKYFVEDEVXLNACNLSITHFIIKLDDHNVKFFKIKQVFKNNFLIIELNLSAFIKIHLIFHVILLSHIASDFLLNQHQKSXEFIIVKNDERFXYVNSILNFKHDRCYNSSLLKYYIDXEDHFFT |
Ga0272433_1000157031 | F028368 | N/A | LLXFQFEFRFKKLVISSKVIEEIEIISLCKLDEILLKENYFEKSFLIDAHLILQNQFFSLRSLINSDSVAHMLIHANLVNKVCEKLEIQSISLIKEKLIRDYNEKISKKIITHKILLNLIIESHKKLTVSMLIADINHHKVILSKLXMNKNEILLNMQNNVIVFLNQLNTFISIFLIFLNSKHSSXLQSTSFSSIIQTKTLIMLKQSVSTMTKKESFSIQSINAASFKTLLNQSKKNQTEVFVLFMTDINKEITYNTQCNLNVLNVSSIDETTQNLKDIKVKLSSEYHEFLNVFDRVQLNKLLSHRFYDHKIELISDSTLSCCXIY |
⦗Top⦘ |