Scaffold Ga0272433_10001560

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001560
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40007
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (27.08%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F006206	Metagenome	378	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F028978	Metagenome	189	Y
F033266	Metagenome	177	Y
F036504	Metagenome	169	Y
F037509	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000156011	F002432	N/A	MKFSDNFNIFSITSMTFFYFNKEFHLXMSFDSDTTDYKTTCEQLKARKANDIVIQMKKLLNLSHQQLKKMKLIIEVQINKHKRDVIYEVNDXVXLFFKNVKIMRSCKDLKDKQLELYQITIKAKVFYHLHLSVSMKHLHSMFSSKLLQLYSEDFLSEQHAEFFRLIIINDDDDEHXEIDDILNFRCYQD
Ga0272433_1000156020	F009580	AGCAG	MIEVRVRRLRLVDKMICIQISEHDLAQKLDFFRRQRDFFIYTDDITVVDVHNMQSEKLFIXAFFSNFAXMLQLAVVTQLSLVADFLDLRNDQSLILNDDNDET
Ga0272433_1000156021	F001951	N/A	MMKLRFIDSSKDEKERDEDTVKTTVTEMMIFEFKKLLVDAEILLTLMNETMTKMKXD
Ga0272433_1000156023	F008735	N/A	MSLLIYDESXLDINNLSSIKEITIIVHVHALYQTLLSCIQSIFVSFILRYIEKLLEFKSDNDSDRVCKKINDERRLIVQDLCDDLSYYCKKLRIQLYINXRTENDEQEQDDNIMLSNLILKLLHYAKDLDXIFNHTLSELFNSTLIVDQEIVRQLHLSERITKXDFNVXKCCRKCRSFIMLKTRLN
Ga0272433_1000156024	F033266	N/A	MFSSSFTEEHFEEFQNRFFQTSDVDSSKSSSAASFIHEDDKSFAEMIILFMFYEIXKTRSLALNEETDRLYKLNKQQEDEIKELKTKFQAKQNTSSDFIYFEHSCHDVKSSIXFRT
Ga0272433_1000156026	F002432	N/A	MQNDXAKXLSMIEFSENFNIFLIISMTSFYFNKSFHSRMSFNSDTIDYETTHERLKAKKANNIIIRIKELLIFDHQQLKKTKQIIEAQINKHKXDIIYEVNDXVXLFSRNIKTTKSCKNLKDKQLKLYQITVKVEIFYYLCLLISMKQLHSMFSSKLLRSYFNDFLSEQHSKSSRSLTIKDDEHXEIDDILNSRXYXDXIQYKIKXTKLDQDNEXYYVNKEEFDDLKEVLVEFHKLYSDKSH
Ga0272433_100015603	F002432	N/A	MQNDXAKXLSMIEYSKNFNIFLIISMTLFYFNKSFHSXISFNSDTTDYKIIHERLEARKADDIVIXMKELLIFDHQQLKKTKQITEAQINKHKXDVIYEVNDXVXLFFRNMKTIRSCKDLKNKQLKLYQIIANIEIFYRLCLSESMKRLHSMFSSKLLRLYFDDSLSEQHSESSKSLTIENDKHXKIDDILNFRCYXDXI
Ga0272433_1000156032	F006206	N/A	LYNQIEVLLKENYFEKSFLINASLISQSNSFNLRSLIDSDFVIYMLIHDKLVNKVCQKFEIQSISLAKEKLIREYDEKLARKTIIYKILLNLTIKSHKKLTVLMLIADIEHYEAILSKLXMNKNEILLNIRHDTIVFSD
Ga0272433_1000156036	F037509	N/A	MILISLFIQVHSTDNKINIKKFVYLMINDIERQNNIKKSIKSMKIYNHVIARESIAQSVTSVQIN
Ga0272433_1000156041	F036504	N/A	VIFRLKDDADQQIYAKHHVDAFSFYHSLSKLLKHLKEIYEDQNLIQKCRCKYVILKQLNKFFSSFYLEFTRIFSFLNYDNITLMNDIQNKINNCLQNALSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDEQXTVKLIATSKKRFVSLLTSALVLTTSYVQLITFFILEFEXSRMSIICFNCKVLNYLSKNCFQLKTSTLTSCAFTSRLNEIIMLKEEKKLFTEKLKNEAKN
Ga0272433_100015608	F028978	N/A	MSNRMKIADLKKKKNDESIYQLILKVNRINKDCVLLHEVVSKDEAQYKDIKLRNYQVQNEILYQDDLL