Scaffold Ga0272433_10001479

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001479
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41656
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (11.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017767	Metagenome	238	Y
F075494	Metagenome	118	Y
F104135	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000147915	F017767	N/A	VLISSTTSMSDDSFASESLTTECVLSSNEINYSLKSLIDIKAADYSFINEVTAQIVCD
Ga0272433_1000147922	F104135	N/A	LNILKHQLSLYSDEHKXAHLFIKLRFELHVIITNVQLISITXNALINLVAXLKTNLQKEYILSSKLFQDENLYDQDKINKKTYSKRKKFYRLIKLNSSLKSSSHASSHYSKDLFNITCXTCNXKDHYTINCKDEKIKNRSKESDVNQVFIDLMLYMSYLKILKKDKLLMNASNH
Ga0272433_100014798	F075494	N/A	MINDVKKTFVHSVSKQRYSVKHVENRSQDEIYCTXMINEVKKMFAHSVSENMNTCSAMHVKSMLLKVMILAVQETHLDKVHFSRDRISQFKSTTSKSTDVETLIHKNHNIIEKQLNFVAETVDCKQLISRTIVKVLTIHETIYNFSSKFIVKLIKILQ