Scaffold Ga0272433_10001464

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001464
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41858
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (10.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F021026	Metagenome	220	Y
F023763	Metagenome	208	Y
F038484	Metagenome	165	Y
F061399	Metagenome	131	Y
F083460	Metagenome	112	Y
F086376	Metagenome	110	Y
F091080	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000146410	F023763	GAG	MSFQNCLMLILISRIECILLFKKIFXATCQSIQLIINLVEIISDAIVEFRQKLTSTSLMMTQLLNXHEILKIFMIHDHLNRINKVFKLXSSFLESANNDHEFFIVDLVVTLNXVMLLXKVSDXIKNLILIILRKNVFEHIVXSIDFYHNFVIXIIMMKNNLESEDFFKSVECNLTFLRSDKEYIFSDEMSERDSYSTIVIDESFIKVREI
Ga0272433_1000146412	F021026	N/A	MNKFFTQQHHLFLHQLIHSRRLQEFDDQVALINDITYVVEITMILNEHIERLFFYVIELNQYFIIISLSXLHHHIIDVNFEHNILILSFFFCLNHCCSFLVKIYDLNQQEENFSFKVNKVTFSQSRFQFAHKK
Ga0272433_1000146413	F008735	N/A	MREIMIIIHVHTLYQTLLSCIQSIFVLLILKYVKKLLKFRSDDDSDRICKRVNDKKRLIVQDLCNDLSYHCKKLRNQFYINXRTKNDEXEXDDNIMLLNLILKLTHCMKNLNXIFNHTLSELFDSMLIIDQEIVKXLHLSERVTRXDFNV
Ga0272433_100014642	F083460	GAG	MQLQMKSSDSQAYSDALLELNTSLIKYAARHQLHKLLNHHFNHEESQDNSENDDENEAAEAV
Ga0272433_1000146420	F091080	N/A	MIILCXSKQVINKNIISFLYFCIMIDVYKVYLIDFQSEVSSYDXIDFDFDSNIDXISKCSHSSDIKDSLMKVMLMTSVFIRARNLNIFSRLFKMTSTVNNLKLNQSSNMLMKQNINILLSIITLMKTDHFSNLQ
Ga0272433_1000146438	F086376	N/A	MTRSTESESVSITHYDFQNVKRESLLSQNQAASEEKKGMNAMSNTEEENINVLLFVYKMIKISINKELNAXITINKTDDIIIFIKYMLHQHDIEIKIHNNMIQMLKNINEINITLKIMQTCLQKKNRDKNVIIHYLKAASSXQSTSISED
Ga0272433_1000146439	F038484	N/A	MRSILMCIARMLSAFXRSSRIFIILLLRCDLCAEIALMSATRSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKKMYHLRLDCIFASSXMKTFRSTIFLMTSEREITRLTLVKRARISSHACLTSCVXSLTRLCSVILFCSMFRXTCSELMYVSVFRVSMFTLLNASATXRRVXFXSISSLHSLFDSSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIASHVKTSRRLSVSILVTXFISICQRCASYRSFVFSCIFKTRRSDFNLITELSIYMLVVMSNFFDFLVKCVSLYFSDANVAS
Ga0272433_100014649	F061399	N/A	MNYVNSLSLNIFINITYKYVLVFINHFIKIRHLVLITFMKVEEVINCFYAHVXKHHDLLEFFVSDQDTQFIFNVXKHMCKMLKINAKLSMMYHFKIDDQIKRINAVMKHYLQIFVNYMQNDXVKXLSEVEFIINNASSLITLASLFLINLSQNSCLDFKSSESLLENLTFQAXNELINVEEFIKKMKKLTEHLRDEMLIAQIIYEFNVNFFHCSCSKYFIEDEVXLNVHNFSIAHLTIKLNNHNVDLFKIKCVFKNNSLIIKLNLSVFMKIHSIFYVILLNHITSDFLLSQHQKSQELVIIKNDERFXYVNSILNFKRDKCYNSSLLKYYIN